Table 1. Performance comparison of COACH-D and COACH-D 2.0 on 20 multimeric structures. The structures are randomly selected from Q-BioLiP by enforcing the following criteria: (1) exclusion of structures with >5 chains or <5 binding residues; (2) pairwise sequence similarity ≤ 30%; (3) ligands are small molecules; (4) the total number of residues in the protein structure is less than 2000.
a results of COACH-D , b results of COACH-D 2.0.
No. |
PDB ID |
Ligand ID |
Chain |
MCCa |
MCCb |
Time(h)a |
Time(h)b |
1 |
1a6w |
NIP |
2 |
0.673 |
0.884 |
7.9 |
0.7 |
2 |
4m20 |
COA |
4 |
0.655 |
0.613 |
7.8 |
1.3 |
3 |
4m8y |
KGQ |
2 |
0.681 |
0.815 |
3.1 |
0.9 |
4 |
4m99 |
ACO |
3 |
0.546 |
0.556 |
8.9 |
1.0 |
5 |
4n5f |
FDA |
2 |
0.706 |
0.680 |
10.4 |
1.4 |
6 |
4p86 |
5GP |
4 |
-0.007 |
0.168 |
10.3 |
1.0 |
7 |
6zth |
NAD |
4 |
-0.003 |
0.710 |
21.9 |
0.8 |
8 |
5suv |
COA |
3 |
0.842 |
0.861 |
5.5 |
0.8 |
9 |
5xuh |
COA |
3 |
0.739 |
0.806 |
4.7 |
0.5 |
10 |
6a03 |
2BA |
2 |
0.793 |
0.883 |
4.7 |
0.3 |
11 |
6dft |
NAD |
4 |
0.695 |
0.695 |
17.1 |
1.4 |
12 |
6p25 |
CPL |
2 |
-0.004 |
0.922 |
19.4 |
1.3 |
13 |
6w3z |
NAD |
4 |
0.766 |
0.777 |
19.7 |
1.3 |
14 |
6xb3 |
9BG |
2 |
0.508 |
0.671 |
7.7 |
0.1 |
15 |
7b6b |
SZQ |
2 |
0.069 |
0.000 |
11.7 |
0.9 |
16 |
7bxr |
F9X |
2 |
0.807 |
0.705 |
12.7 |
1.6 |
17 |
6o6y |
LQJ |
2 |
0.584 |
0.974 |
10.7 |
0.4 |
18 |
8dor |
FMN |
2 |
0.974 |
0.974 |
5.3 |
0.9 |
19 |
8e77 |
ULP |
2 |
0.869 |
0.860 |
11.9 |
1.5 |
20 |
8eg6 |
US9 |
4 |
0.633 |
0.631 |
7.1 |
1.3 |
21 |
Average |
-- |
-- |
0.576 |
0.709 |
10.4 |
1.0 |
|