Function Annotation for BL3279347


spin

Assembly

Assembly ID: 1d83_1

Assembly defined by: Author
PDB ID: 1d83
Experimental method: SOLUTION NMR
Resolution: N/A
UniProt ID: N/A
PubMed ID: 1731073

Ligand 1 : CPH
Ligand 2 : CDR
Ligand 3 : CDR
Ligand 4 : ERI
Ligand 5 : ARI
Ligand 6 : 1GL
Ligand 7 : CDR
Ligand 8 : CDR
Ligand 9 : ERI
Ligand 10 : ARI
Ligand 11 : 1GL
Ligand 12 : CPH
Ligand 13 : MG
Ligand 14 : DNA

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 mmCIF Format 
    PDB Format 

Ligand ID NUC pairing detail Ligand Name Synonyms Formula 2D structure
CPH N/A (1s)-5-deoxy-1-o-methyl-1-c-[(2r,3s)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-d-xylulose "C21 H24 O9" N/A
CDR N/A (2r,5s,6r)-6-methyltetrahydro-2h-pyran-2,5-diol "C6 H12 O3" N/A
CDR N/A (2r,5s,6r)-6-methyltetrahydro-2h-pyran-2,5-diol "C6 H12 O3" N/A
ERI N/A 3-c-methyl-4-o-acetyl-alpha-l-olivopyranose "C9 H16 O5" N/A
ARI N/A (2r,3r,6r)-6-hydroxy-2-methyltetrahydro-2h-pyran-3-yl acetate "C8 H14 O4" N/A
1GL N/A 2,6-dideoxy-4-o-methyl-alpha-d-galactopyranose "C7 H14 O4" N/A
CDR N/A (2r,5s,6r)-6-methyltetrahydro-2h-pyran-2,5-diol "C6 H12 O3" N/A
CDR N/A (2r,5s,6r)-6-methyltetrahydro-2h-pyran-2,5-diol "C6 H12 O3" N/A
ERI N/A 3-c-methyl-4-o-acetyl-alpha-l-olivopyranose "C9 H16 O5" N/A
ARI N/A (2r,3r,6r)-6-hydroxy-2-methyltetrahydro-2h-pyran-3-yl acetate "C8 H14 O4" N/A
1GL N/A 2,6-dideoxy-4-o-methyl-alpha-d-galactopyranose "C7 H14 O4" N/A
CPH N/A (1s)-5-deoxy-1-o-methyl-1-c-[(2r,3s)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-d-xylulose "C21 H24 O9" N/A
MG N/A Magnesium(2+) Mg N/A
DNA B:DNA A:DNA Deoxyribonucleic acid "C11 H8 O4" N/A
Reference

  • Wei et al, Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions, Genomics, Proteomics & Bioinformatics, 22(1), qzae001, 2024. (PDF)