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Yang Lab
Function Annotation for BL3279298
3D View
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data_1cwz_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N . ARG A 1 1 ? -4.472 -1.560 2.138 1.00 0.00 ? 2 ARG A N 1 HETATM 2 C CA . ARG A 1 1 ? -3.442 -1.804 1.088 1.00 0.00 ? 2 ARG A CA 1 HETATM 3 C CB . ARG A 1 1 ? -2.843 -3.231 1.266 1.00 0.00 ? 2 ARG A CB 1 HETATM 4 C CG . ARG A 1 1 ? -2.183 -3.592 2.627 1.00 0.00 ? 2 ARG A CG 1 HETATM 5 C CD . ARG A 1 1 ? -1.489 -4.969 2.673 1.00 0.00 ? 2 ARG A CD 1 HETATM 6 N NE . ARG A 1 1 ? -2.445 -6.101 2.565 1.00 0.00 ? 2 ARG A NE 1 HETATM 7 C CZ . ARG A 1 1 ? -2.088 -7.381 2.346 1.00 0.00 ? 2 ARG A CZ 1 HETATM 8 N NH1 . ARG A 1 1 ? -0.828 -7.791 2.219 1.00 0.00 ? 2 ARG A NH1 1 HETATM 9 N NH2 . ARG A 1 1 ? -3.046 -8.283 2.249 1.00 0.00 ? 2 ARG A NH2 1 HETATM 10 C C . ARG A 1 1 ? -2.390 -0.653 1.040 1.00 0.00 ? 2 ARG A C 1 HETATM 11 O O . ARG A 1 1 ? -1.202 -0.875 1.294 1.00 0.00 ? 2 ARG A O 1 HETATM 12 H H . ARG A 1 1 ? -4.292 -1.671 3.141 1.00 0.00 ? 2 ARG A H 1 HETATM 13 H HA . ARG A 1 1 ? -3.920 -1.832 0.089 1.00 0.00 ? 2 ARG A HA 1 HETATM 14 H HB2 . ARG A 1 1 ? -2.107 -3.398 0.457 1.00 0.00 ? 2 ARG A HB2 1 HETATM 15 H HB3 . ARG A 1 1 ? -3.643 -3.969 1.062 1.00 0.00 ? 2 ARG A HB3 1 HETATM 16 H HG2 . ARG A 1 1 ? -2.930 -3.526 3.440 1.00 0.00 ? 2 ARG A HG2 1 HETATM 17 H HG3 . ARG A 1 1 ? -1.424 -2.829 2.878 1.00 0.00 ? 2 ARG A HG3 1 HETATM 18 H HD2 . ARG A 1 1 ? -0.934 -5.059 3.625 1.00 0.00 ? 2 ARG A HD2 1 HETATM 19 H HD3 . ARG A 1 1 ? -0.725 -5.024 1.876 1.00 0.00 ? 2 ARG A HD3 1 HETATM 20 H HE . ARG A 1 1 ? -3.457 -5.954 2.643 1.00 0.00 ? 2 ARG A HE 1 HETATM 21 H HH11 . ARG A 1 1 ? -0.686 -8.795 2.053 1.00 0.00 ? 2 ARG A HH11 1 HETATM 22 H HH12 . ARG A 1 1 ? -0.103 -7.071 2.301 1.00 0.00 ? 2 ARG A HH12 1 HETATM 23 H HH21 . ARG A 1 1 ? -2.749 -9.251 2.082 1.00 0.00 ? 2 ARG A HH21 1 HETATM 24 H HH22 . ARG A 1 1 ? -4.007 -7.943 2.352 1.00 0.00 ? 2 ARG A HH22 1 HETATM 25 N N . GLU A 1 2 ? -2.818 0.568 0.639 1.00 0.00 ? 3 GLU A N 1 HETATM 26 C CA . GLU A 1 2 ? -1.938 1.775 0.557 1.00 0.00 ? 3 GLU A CA 1 HETATM 27 C C . GLU A 1 2 ? -0.596 1.627 -0.226 1.00 0.00 ? 3 GLU A C 1 HETATM 28 O O . GLU A 1 2 ? 0.433 2.091 0.271 1.00 0.00 ? 3 GLU A O 1 HETATM 29 C CB . GLU A 1 2 ? -2.797 2.990 0.105 1.00 0.00 ? 3 GLU A CB 1 HETATM 30 C CG . GLU A 1 2 ? -2.117 4.380 0.065 1.00 0.00 ? 3 GLU A CG 1 HETATM 31 C CD . GLU A 1 2 ? -1.499 4.858 1.386 1.00 0.00 ? 3 GLU A CD 1 HETATM 32 O OE1 . GLU A 1 2 ? -2.251 5.296 2.284 1.00 0.00 ? 3 GLU A OE1 1 HETATM 33 O OE2 . GLU A 1 2 ? -0.256 4.800 1.528 1.00 0.00 ? 3 GLU A OE2 1 HETATM 34 H H . GLU A 1 2 ? -3.825 0.634 0.456 1.00 0.00 ? 3 GLU A H 1 HETATM 35 H HA . GLU A 1 2 ? -1.641 1.980 1.599 1.00 0.00 ? 3 GLU A HA 1 HETATM 36 H HB2 . GLU A 1 2 ? -3.686 3.072 0.758 1.00 0.00 ? 3 GLU A HB2 1 HETATM 37 H HB3 . GLU A 1 2 ? -3.209 2.790 -0.903 1.00 0.00 ? 3 GLU A HB3 1 HETATM 38 H HG2 . GLU A 1 2 ? -2.857 5.132 -0.266 1.00 0.00 ? 3 GLU A HG2 1 HETATM 39 H HG3 . GLU A 1 2 ? -1.342 4.390 -0.723 1.00 0.00 ? 3 GLU A HG3 1 HETATM 40 N N . GLY A 1 3 ? -0.607 0.996 -1.410 1.00 0.00 ? 4 GLY A N 1 HETATM 41 C CA . GLY A 1 3 ? 0.633 0.772 -2.199 1.00 0.00 ? 4 GLY A CA 1 HETATM 42 C C . GLY A 1 3 ? 1.623 -0.306 -1.669 1.00 0.00 ? 4 GLY A C 1 HETATM 43 O O . GLY A 1 3 ? 2.797 -0.258 -2.045 1.00 0.00 ? 4 GLY A O 1 HETATM 44 H H . GLY A 1 3 ? -1.468 0.464 -1.569 1.00 0.00 ? 4 GLY A H 1 HETATM 45 H HA2 . GLY A 1 3 ? 0.341 0.491 -3.227 1.00 0.00 ? 4 GLY A HA2 1 HETATM 46 H HA3 . GLY A 1 3 ? 1.175 1.731 -2.317 1.00 0.00 ? 4 GLY A HA3 1 HETATM 47 N N . ARG A 1 4 ? 1.165 -1.250 -0.819 1.00 0.00 ? 5 ARG A N 1 HETATM 48 C CA . ARG A 1 4 ? 2.021 -2.322 -0.236 1.00 0.00 ? 5 ARG A CA 1 HETATM 49 C CB . ARG A 1 4 ? 1.275 -3.683 -0.180 1.00 0.00 ? 5 ARG A CB 1 HETATM 50 C CG . ARG A 1 4 ? 0.976 -4.319 -1.560 1.00 0.00 ? 5 ARG A CG 1 HETATM 51 C CD . ARG A 1 4 ? 0.407 -5.754 -1.513 1.00 0.00 ? 5 ARG A CD 1 HETATM 52 N NE . ARG A 1 4 ? -0.981 -5.854 -0.986 1.00 0.00 ? 5 ARG A NE 1 HETATM 53 C CZ . ARG A 1 4 ? -2.100 -5.760 -1.731 1.00 0.00 ? 5 ARG A CZ 1 HETATM 54 N NH1 . ARG A 1 4 ? -3.260 -5.939 -1.131 1.00 0.00 ? 5 ARG A NH1 1 HETATM 55 N NH2 . ARG A 1 4 ? -2.107 -5.497 -3.035 1.00 0.00 ? 5 ARG A NH2 1 HETATM 56 C C . ARG A 1 4 ? 2.607 -1.908 1.151 1.00 0.00 ? 5 ARG A C 1 HETATM 57 O O . ARG A 1 4 ? 3.828 -1.983 1.317 1.00 0.00 ? 5 ARG A O 1 HETATM 58 H H . ARG A 1 4 ? 0.182 -1.118 -0.538 1.00 0.00 ? 5 ARG A H 1 HETATM 59 H HA . ARG A 1 4 ? 2.894 -2.486 -0.901 1.00 0.00 ? 5 ARG A HA 1 HETATM 60 H HB2 . ARG A 1 4 ? 0.336 -3.578 0.393 1.00 0.00 ? 5 ARG A HB2 1 HETATM 61 H HB3 . ARG A 1 4 ? 1.887 -4.404 0.397 1.00 0.00 ? 5 ARG A HB3 1 HETATM 62 H HG2 . ARG A 1 4 ? 1.914 -4.349 -2.144 1.00 0.00 ? 5 ARG A HG2 1 HETATM 63 H HG3 . ARG A 1 4 ? 0.297 -3.666 -2.141 1.00 0.00 ? 5 ARG A HG3 1 HETATM 64 H HD2 . ARG A 1 4 ? 1.062 -6.390 -0.888 1.00 0.00 ? 5 ARG A HD2 1 HETATM 65 H HD3 . ARG A 1 4 ? 0.470 -6.207 -2.520 1.00 0.00 ? 5 ARG A HD3 1 HETATM 66 H HE . ARG A 1 4 ? -1.155 -6.058 0.003 1.00 0.00 ? 5 ARG A HE 1 HETATM 67 H HH11 . ARG A 1 4 ? -4.098 -5.863 -1.718 1.00 0.00 ? 5 ARG A HH11 1 HETATM 68 H HH12 . ARG A 1 4 ? -3.228 -6.139 -0.126 1.00 0.00 ? 5 ARG A HH12 1 HETATM 69 H HH21 . ARG A 1 4 ? -3.023 -5.451 -3.493 1.00 0.00 ? 5 ARG A HH21 1 HETATM 70 H HH22 . ARG A 1 4 ? -1.190 -5.362 -3.477 1.00 0.00 ? 5 ARG A HH22 1 HETATM 71 N N . ILE A 1 5 ? 1.775 -1.478 2.132 1.00 0.00 ? 6 ILE A N 1 HETATM 72 C CA . ILE A 1 5 ? 2.254 -1.058 3.487 1.00 0.00 ? 6 ILE A CA 1 HETATM 73 C C . ILE A 1 5 ? 3.048 0.298 3.542 1.00 0.00 ? 6 ILE A C 1 HETATM 74 O O . ILE A 1 5 ? 3.941 0.419 4.387 1.00 0.00 ? 6 ILE A O 1 HETATM 75 C CB . ILE A 1 5 ? 1.096 -1.189 4.544 1.00 0.00 ? 6 ILE A CB 1 HETATM 76 C CG1 . ILE A 1 5 ? 1.641 -1.335 5.996 1.00 0.00 ? 6 ILE A CG1 1 HETATM 77 C CG2 . ILE A 1 5 ? 0.017 -0.075 4.461 1.00 0.00 ? 6 ILE A CG2 1 HETATM 78 C CD1 . ILE A 1 5 ? 0.633 -1.842 7.040 1.00 0.00 ? 6 ILE A CD1 1 HETATM 79 H H . ILE A 1 5 ? 0.786 -1.407 1.870 1.00 0.00 ? 6 ILE A H 1 HETATM 80 H HA . ILE A 1 5 ? 2.997 -1.827 3.774 1.00 0.00 ? 6 ILE A HA 1 HETATM 81 H HB . ILE A 1 5 ? 0.574 -2.143 4.327 1.00 0.00 ? 6 ILE A HB 1 HETATM 82 H HG12 . ILE A 1 5 ? 2.069 -0.375 6.342 1.00 0.00 ? 6 ILE A HG12 1 HETATM 83 H HG13 . ILE A 1 5 ? 2.492 -2.041 5.999 1.00 0.00 ? 6 ILE A HG13 1 HETATM 84 H HG21 . ILE A 1 5 ? -0.344 0.078 3.431 1.00 0.00 ? 6 ILE A HG21 1 HETATM 85 H HG22 . ILE A 1 5 ? 0.400 0.900 4.815 1.00 0.00 ? 6 ILE A HG22 1 HETATM 86 H HG23 . ILE A 1 5 ? -0.873 -0.317 5.071 1.00 0.00 ? 6 ILE A HG23 1 HETATM 87 H HD11 . ILE A 1 5 ? -0.204 -1.136 7.186 1.00 0.00 ? 6 ILE A HD11 1 HETATM 88 H HD12 . ILE A 1 5 ? 1.117 -1.978 8.025 1.00 0.00 ? 6 ILE A HD12 1 HETATM 89 H HD13 . ILE A 1 5 ? 0.201 -2.818 6.750 1.00 0.00 ? 6 ILE A HD13 1 HETATM 90 N N . GLY A 1 6 ? 2.733 1.287 2.681 1.00 0.00 ? 7 GLY A N 1 HETATM 91 C CA . GLY A 1 6 ? 3.427 2.595 2.652 1.00 0.00 ? 7 GLY A CA 1 HETATM 92 C C . GLY A 1 6 ? 3.794 2.982 1.209 1.00 0.00 ? 7 GLY A C 1 HETATM 93 O O . GLY A 1 6 ? 4.840 2.560 0.708 1.00 0.00 ? 7 GLY A O 1 HETATM 94 H H . GLY A 1 6 ? 2.052 1.020 1.960 1.00 0.00 ? 7 GLY A H 1 HETATM 95 H HA2 . GLY A 1 6 ? 2.781 3.360 3.124 1.00 0.00 ? 7 GLY A HA2 1 HETATM 96 H HA3 . GLY A 1 6 ? 4.356 2.589 3.254 1.00 0.00 ? 7 GLY A HA3 1 HETATM 97 N N . GLY A 1 7 ? 2.941 3.789 0.561 1.00 0.00 ? 8 GLY A N 1 HETATM 98 C CA . GLY A 1 7 ? 3.179 4.225 -0.831 1.00 0.00 ? 8 GLY A CA 1 HETATM 99 C C . GLY A 1 7 ? 2.005 5.051 -1.379 1.00 0.00 ? 8 GLY A C 1 HETATM 100 O O . GLY A 1 7 ? 1.020 4.479 -1.855 1.00 0.00 ? 8 GLY A O 1 HETATM 101 H H . GLY A 1 7 ? 2.084 4.020 1.077 1.00 0.00 ? 8 GLY A H 1 HETATM 102 H HA2 . GLY A 1 7 ? 4.132 4.786 -0.899 1.00 0.00 ? 8 GLY A HA2 1 HETATM 103 H HA3 . GLY A 1 7 ? 3.314 3.338 -1.481 1.00 0.00 ? 8 GLY A HA3 1 HETATM 104 N N . CYS A 1 8 ? 2.128 6.389 -1.312 1.00 0.00 ? 9 CYS A N 1 HETATM 105 C CA . CYS A 1 8 ? 1.085 7.327 -1.801 1.00 0.00 ? 9 CYS A CA 1 HETATM 106 C C . CYS A 1 8 ? 0.039 7.650 -0.699 1.00 0.00 ? 9 CYS A C 1 HETATM 107 O O . CYS A 1 8 ? 0.358 7.883 0.468 1.00 0.00 ? 9 CYS A O 1 HETATM 108 C CB . CYS A 1 8 ? 0.350 6.733 -3.020 1.00 0.00 ? 9 CYS A CB 1 HETATM 109 S SG . CYS A 1 8 ? -0.828 7.945 -3.708 1.00 0.00 ? 9 CYS A SG 1 HETATM 110 H H . CYS A 1 8 ? 3.018 6.726 -0.927 1.00 0.00 ? 9 CYS A H 1 HETATM 111 H HA . CYS A 1 8 ? 1.556 8.271 -2.145 1.00 0.00 ? 9 CYS A HA 1 HETATM 112 H HB2 . CYS A 1 8 ? 1.069 6.462 -3.816 1.00 0.00 ? 9 CYS A HB2 1 HETATM 113 H HB3 . CYS A 1 8 ? -0.192 5.803 -2.761 1.00 0.00 ? 9 CYS A HB3 1 HETATM 114 H HG . CYS A 1 8 ? -1.265 7.172 -4.698 1.00 0.00 ? 9 CYS A HG 1 HETATM 115 N N . NH2 A 1 9 ? -1.239 7.687 -1.051 1.00 0.00 ? 10 NH2 A N 1 HETATM 116 H HN1 . NH2 A 1 9 ? -1.913 7.909 -0.309 1.00 0.00 ? 10 NH2 A HN1 1 HETATM 117 H HN2 . NH2 A 1 9 ? -1.451 7.492 -2.035 1.00 0.00 ? 10 NH2 A HN2 1 HETATM 118 C C1 . DXX B 2 . ? -7.194 -2.287 3.661 1.00 0.00 ? 1 DXX A C1 1 HETATM 119 O O1 . DXX B 2 . ? -6.231 -2.985 4.350 1.00 0.00 ? 1 DXX A O1 1 HETATM 120 O OXT . DXX B 2 . ? -8.349 -2.680 3.506 1.00 0.00 ? 1 DXX A OXT 1 HETATM 121 C CA . DXX B 2 . ? -6.675 -0.950 3.088 1.00 0.00 ? 1 DXX A CA 1 HETATM 122 C CB . DXX B 2 . ? -6.152 0.011 4.181 1.00 0.00 ? 1 DXX A CB 1 HETATM 123 C C . DXX B 2 . ? -5.727 -1.154 1.877 1.00 0.00 ? 1 DXX A C 1 HETATM 124 O O . DXX B 2 . ? -6.140 -0.941 0.733 1.00 0.00 ? 1 DXX A O 1 HETATM 125 H H1 . DXX B 2 . ? -6.567 -3.812 4.698 1.00 0.00 ? 1 DXX A H1 1 HETATM 126 H HA . DXX B 2 . ? -7.559 -0.438 2.675 1.00 0.00 ? 1 DXX A HA 1 HETATM 127 H HB1 . DXX B 2 . ? -5.261 -0.392 4.698 1.00 0.00 ? 1 DXX A HB1 1 HETATM 128 H HB2 . DXX B 2 . ? -5.869 0.992 3.755 1.00 0.00 ? 1 DXX A HB2 1 HETATM 129 H HB3 . DXX B 2 . ? -6.919 0.206 4.954 1.00 0.00 ? 1 DXX A HB3 1
spin
Assembly
Assembly ID: 1cwz_1
Assembly defined by
: Author
PDB ID
:
1cwz
Experimental method
: SOLUTION NMR
Resolution
: N/A
UniProt ID
: N/A
PubMed ID
:
11341837
Ligand 1
:
DXX
Ligand 2
:
III
Download
mmCIF Format
PDB Format
Ligand ID
NUC pairing detail
Ligand Name
Synonyms
Formula
2D structure
DXX
N/A
Methylmalonic acid
1: 2-methylmalonic acid; 2: Alpha-methylmalonic acid; 3: Methylpropanedioic acid; 4: 1,1-ethanedicarboxylic acid; 5: Isosuccinic acid;
"C4 H6 O4"
III
N/A
Peptide
N/A
"C14 H18 N4"
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)
