Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
Yang Lab
Function Annotation for BL3279295
3D View
More Information
data_1cw8_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N . ARG A 1 1 ? 1.521 -3.903 0.981 1.00 0.00 ? 2 ARG A N 1 HETATM 2 C CA . ARG A 1 1 ? 1.545 -2.438 1.238 1.00 0.00 ? 2 ARG A CA 1 HETATM 3 C CB . ARG A 1 1 ? 0.099 -1.871 1.244 1.00 0.00 ? 2 ARG A CB 1 HETATM 4 C CG . ARG A 1 1 ? -0.825 -2.307 2.406 1.00 0.00 ? 2 ARG A CG 1 HETATM 5 C CD . ARG A 1 1 ? -2.171 -1.552 2.450 1.00 0.00 ? 2 ARG A CD 1 HETATM 6 N NE . ARG A 1 1 ? -3.035 -1.844 1.274 1.00 0.00 ? 2 ARG A NE 1 HETATM 7 C CZ . ARG A 1 1 ? -3.925 -0.986 0.739 1.00 0.00 ? 2 ARG A CZ 1 HETATM 8 N NH1 . ARG A 1 1 ? -4.575 -1.366 -0.344 1.00 0.00 ? 2 ARG A NH1 1 HETATM 9 N NH2 . ARG A 1 1 ? -4.189 0.221 1.233 1.00 0.00 ? 2 ARG A NH2 1 HETATM 10 C C . ARG A 1 1 ? 2.422 -1.738 0.152 1.00 0.00 ? 2 ARG A C 1 HETATM 11 O O . ARG A 1 1 ? 1.889 -1.273 -0.865 1.00 0.00 ? 2 ARG A O 1 HETATM 12 H H . ARG A 1 1 ? 0.863 -4.328 0.317 1.00 0.00 ? 2 ARG A H 1 HETATM 13 H HA . ARG A 1 1 ? 1.936 -2.225 2.255 1.00 0.00 ? 2 ARG A HA 1 HETATM 14 H HB2 . ARG A 1 1 ? -0.394 -2.119 0.285 1.00 0.00 ? 2 ARG A HB2 1 HETATM 15 H HB3 . ARG A 1 1 ? 0.159 -0.764 1.258 1.00 0.00 ? 2 ARG A HB3 1 HETATM 16 H HG2 . ARG A 1 1 ? -0.301 -2.137 3.365 1.00 0.00 ? 2 ARG A HG2 1 HETATM 17 H HG3 . ARG A 1 1 ? -1.003 -3.398 2.361 1.00 0.00 ? 2 ARG A HG3 1 HETATM 18 H HD2 . ARG A 1 1 ? -1.969 -0.468 2.549 1.00 0.00 ? 2 ARG A HD2 1 HETATM 19 H HD3 . ARG A 1 1 ? -2.717 -1.836 3.368 1.00 0.00 ? 2 ARG A HD3 1 HETATM 20 H HE . ARG A 1 1 ? -2.956 -2.733 0.769 1.00 0.00 ? 2 ARG A HE 1 HETATM 21 H HH11 . ARG A 1 1 ? -5.248 -0.696 -0.735 1.00 0.00 ? 2 ARG A HH11 1 HETATM 22 H HH12 . ARG A 1 1 ? -4.354 -2.299 -0.707 1.00 0.00 ? 2 ARG A HH12 1 HETATM 23 H HH21 . ARG A 1 1 ? -4.889 0.780 0.732 1.00 0.00 ? 2 ARG A HH21 1 HETATM 24 H HH22 . ARG A 1 1 ? -3.671 0.494 2.075 1.00 0.00 ? 2 ARG A HH22 1 HETATM 25 N N . GLU A 1 2 ? 3.759 -1.637 0.359 1.00 0.00 ? 3 GLU A N 1 HETATM 26 C CA . GLU A 1 2 ? 4.699 -0.979 -0.604 1.00 0.00 ? 3 GLU A CA 1 HETATM 27 C C . GLU A 1 2 ? 4.316 0.446 -1.120 1.00 0.00 ? 3 GLU A C 1 HETATM 28 O O . GLU A 1 2 ? 4.485 0.727 -2.311 1.00 0.00 ? 3 GLU A O 1 HETATM 29 C CB . GLU A 1 2 ? 6.170 -1.082 -0.103 1.00 0.00 ? 3 GLU A CB 1 HETATM 30 C CG . GLU A 1 2 ? 6.641 -0.196 1.079 1.00 0.00 ? 3 GLU A CG 1 HETATM 31 C CD . GLU A 1 2 ? 6.009 -0.517 2.437 1.00 0.00 ? 3 GLU A CD 1 HETATM 32 O OE1 . GLU A 1 2 ? 6.454 -1.479 3.101 1.00 0.00 ? 3 GLU A OE1 1 HETATM 33 O OE2 . GLU A 1 2 ? 5.060 0.191 2.844 1.00 0.00 ? 3 GLU A OE2 1 HETATM 34 H H . GLU A 1 2 ? 4.145 -2.152 1.158 1.00 0.00 ? 3 GLU A H 1 HETATM 35 H HA . GLU A 1 2 ? 4.665 -1.622 -1.504 1.00 0.00 ? 3 GLU A HA 1 HETATM 36 H HB2 . GLU A 1 2 ? 6.830 -0.851 -0.961 1.00 0.00 ? 3 GLU A HB2 1 HETATM 37 H HB3 . GLU A 1 2 ? 6.407 -2.140 0.128 1.00 0.00 ? 3 GLU A HB3 1 HETATM 38 H HG2 . GLU A 1 2 ? 6.481 0.871 0.838 1.00 0.00 ? 3 GLU A HG2 1 HETATM 39 H HG3 . GLU A 1 2 ? 7.738 -0.295 1.179 1.00 0.00 ? 3 GLU A HG3 1 HETATM 40 N N . GLY A 1 3 ? 3.807 1.318 -0.232 1.00 0.00 ? 4 GLY A N 1 HETATM 41 C CA . GLY A 1 3 ? 3.352 2.680 -0.605 1.00 0.00 ? 4 GLY A CA 1 HETATM 42 C C . GLY A 1 3 ? 1.911 2.798 -1.180 1.00 0.00 ? 4 GLY A C 1 HETATM 43 O O . GLY A 1 3 ? 1.626 3.814 -1.819 1.00 0.00 ? 4 GLY A O 1 HETATM 44 H H . GLY A 1 3 ? 3.612 0.908 0.688 1.00 0.00 ? 4 GLY A H 1 HETATM 45 H HA2 . GLY A 1 3 ? 3.410 3.318 0.295 1.00 0.00 ? 4 GLY A HA2 1 HETATM 46 H HA3 . GLY A 1 3 ? 4.065 3.139 -1.317 1.00 0.00 ? 4 GLY A HA3 1 HETATM 47 N N . ARG A 1 4 ? 1.013 1.813 -0.943 1.00 0.00 ? 5 ARG A N 1 HETATM 48 C CA . ARG A 1 4 ? -0.383 1.834 -1.463 1.00 0.00 ? 5 ARG A CA 1 HETATM 49 C CB . ARG A 1 4 ? -1.402 2.281 -0.374 1.00 0.00 ? 5 ARG A CB 1 HETATM 50 C CG . ARG A 1 4 ? -1.325 3.766 0.043 1.00 0.00 ? 5 ARG A CG 1 HETATM 51 C CD . ARG A 1 4 ? -2.405 4.146 1.073 1.00 0.00 ? 5 ARG A CD 1 HETATM 52 N NE . ARG A 1 4 ? -2.300 5.577 1.447 1.00 0.00 ? 5 ARG A NE 1 HETATM 53 C CZ . ARG A 1 4 ? -3.119 6.199 2.316 1.00 0.00 ? 5 ARG A CZ 1 HETATM 54 N NH1 . ARG A 1 4 ? -4.126 5.600 2.947 1.00 0.00 ? 5 ARG A NH1 1 HETATM 55 N NH2 . ARG A 1 4 ? -2.910 7.480 2.555 1.00 0.00 ? 5 ARG A NH2 1 HETATM 56 C C . ARG A 1 4 ? -0.690 0.412 -2.009 1.00 0.00 ? 5 ARG A C 1 HETATM 57 O O . ARG A 1 4 ? -1.311 -0.412 -1.330 1.00 0.00 ? 5 ARG A O 1 HETATM 58 H H . ARG A 1 4 ? 1.418 0.964 -0.520 1.00 0.00 ? 5 ARG A H 1 HETATM 59 H HA . ARG A 1 4 ? -0.475 2.546 -2.309 1.00 0.00 ? 5 ARG A HA 1 HETATM 60 H HB2 . ARG A 1 4 ? -1.302 1.638 0.522 1.00 0.00 ? 5 ARG A HB2 1 HETATM 61 H HB3 . ARG A 1 4 ? -2.426 2.089 -0.751 1.00 0.00 ? 5 ARG A HB3 1 HETATM 62 H HG2 . ARG A 1 4 ? -1.423 4.404 -0.857 1.00 0.00 ? 5 ARG A HG2 1 HETATM 63 H HG3 . ARG A 1 4 ? -0.323 3.981 0.460 1.00 0.00 ? 5 ARG A HG3 1 HETATM 64 H HD2 . ARG A 1 4 ? -2.303 3.514 1.976 1.00 0.00 ? 5 ARG A HD2 1 HETATM 65 H HD3 . ARG A 1 4 ? -3.410 3.940 0.658 1.00 0.00 ? 5 ARG A HD3 1 HETATM 66 H HE . ARG A 1 4 ? -1.573 6.180 1.045 1.00 0.00 ? 5 ARG A HE 1 HETATM 67 H HH11 . ARG A 1 4 ? -4.680 6.180 3.586 1.00 0.00 ? 5 ARG A HH11 1 HETATM 68 H HH12 . ARG A 1 4 ? -4.265 4.605 2.742 1.00 0.00 ? 5 ARG A HH12 1 HETATM 69 H HH21 . ARG A 1 4 ? -3.546 7.933 3.220 1.00 0.00 ? 5 ARG A HH21 1 HETATM 70 H HH22 . ARG A 1 4 ? -2.129 7.917 2.056 1.00 0.00 ? 5 ARG A HH22 1 HETATM 71 N N . ILE A 1 5 ? -0.253 0.133 -3.252 1.00 0.00 ? 6 ILE A N 1 HETATM 72 C CA . ILE A 1 5 ? -0.459 -1.196 -3.912 1.00 0.00 ? 6 ILE A CA 1 HETATM 73 C C . ILE A 1 5 ? -1.895 -1.492 -4.463 1.00 0.00 ? 6 ILE A C 1 HETATM 74 O O . ILE A 1 5 ? -2.258 -2.670 -4.544 1.00 0.00 ? 6 ILE A O 1 HETATM 75 C CB . ILE A 1 5 ? 0.687 -1.527 -4.941 1.00 0.00 ? 6 ILE A CB 1 HETATM 76 C CG1 . ILE A 1 5 ? 0.985 -0.494 -6.074 1.00 0.00 ? 6 ILE A CG1 1 HETATM 77 C CG2 . ILE A 1 5 ? 2.014 -1.852 -4.208 1.00 0.00 ? 6 ILE A CG2 1 HETATM 78 C CD1 . ILE A 1 5 ? -0.103 -0.304 -7.143 1.00 0.00 ? 6 ILE A CD1 1 HETATM 79 H H . ILE A 1 5 ? 0.248 0.899 -3.717 1.00 0.00 ? 6 ILE A H 1 HETATM 80 H HA . ILE A 1 5 ? -0.346 -1.957 -3.113 1.00 0.00 ? 6 ILE A HA 1 HETATM 81 H HB . ILE A 1 5 ? 0.410 -2.474 -5.444 1.00 0.00 ? 6 ILE A HB 1 HETATM 82 H HG12 . ILE A 1 5 ? 1.897 -0.809 -6.617 1.00 0.00 ? 6 ILE A HG12 1 HETATM 83 H HG13 . ILE A 1 5 ? 1.242 0.491 -5.641 1.00 0.00 ? 6 ILE A HG13 1 HETATM 84 H HG21 . ILE A 1 5 ? 2.426 -0.972 -3.680 1.00 0.00 ? 6 ILE A HG21 1 HETATM 85 H HG22 . ILE A 1 5 ? 2.795 -2.211 -4.904 1.00 0.00 ? 6 ILE A HG22 1 HETATM 86 H HG23 . ILE A 1 5 ? 1.881 -2.649 -3.453 1.00 0.00 ? 6 ILE A HG23 1 HETATM 87 H HD11 . ILE A 1 5 ? -0.966 0.262 -6.756 1.00 0.00 ? 6 ILE A HD11 1 HETATM 88 H HD12 . ILE A 1 5 ? -0.473 -1.270 -7.533 1.00 0.00 ? 6 ILE A HD12 1 HETATM 89 H HD13 . ILE A 1 5 ? 0.288 0.268 -8.004 1.00 0.00 ? 6 ILE A HD13 1 HETATM 90 N N . GLY A 1 6 ? -2.698 -0.474 -4.826 1.00 0.00 ? 7 GLY A N 1 HETATM 91 C CA . GLY A 1 6 ? -4.063 -0.674 -5.362 1.00 0.00 ? 7 GLY A CA 1 HETATM 92 C C . GLY A 1 6 ? -4.492 0.545 -6.193 1.00 0.00 ? 7 GLY A C 1 HETATM 93 O O . GLY A 1 6 ? -5.129 1.459 -5.663 1.00 0.00 ? 7 GLY A O 1 HETATM 94 H H . GLY A 1 6 ? -2.290 0.461 -4.707 1.00 0.00 ? 7 GLY A H 1 HETATM 95 H HA2 . GLY A 1 6 ? -4.132 -1.600 -5.967 1.00 0.00 ? 7 GLY A HA2 1 HETATM 96 H HA3 . GLY A 1 6 ? -4.769 -0.813 -4.522 1.00 0.00 ? 7 GLY A HA3 1 HETATM 97 N N . GLY A 1 7 ? -4.135 0.544 -7.489 1.00 0.00 ? 8 GLY A N 1 HETATM 98 C CA . GLY A 1 7 ? -4.467 1.655 -8.414 1.00 0.00 ? 8 GLY A CA 1 HETATM 99 C C . GLY A 1 7 ? -3.388 2.757 -8.419 1.00 0.00 ? 8 GLY A C 1 HETATM 100 O O . GLY A 1 7 ? -3.355 3.582 -7.499 1.00 0.00 ? 8 GLY A O 1 HETATM 101 H H . GLY A 1 7 ? -3.623 -0.294 -7.786 1.00 0.00 ? 8 GLY A H 1 HETATM 102 H HA2 . GLY A 1 7 ? -4.616 1.238 -9.428 1.00 0.00 ? 8 GLY A HA2 1 HETATM 103 H HA3 . GLY A 1 7 ? -5.444 2.108 -8.156 1.00 0.00 ? 8 GLY A HA3 1 HETATM 104 N N . CYS A 1 8 ? -2.540 2.779 -9.464 1.00 0.00 ? 9 CYS A N 1 HETATM 105 C CA . CYS A 1 8 ? -1.441 3.772 -9.613 1.00 0.00 ? 9 CYS A CA 1 HETATM 106 C C . CYS A 1 8 ? -0.809 3.563 -11.012 1.00 0.00 ? 9 CYS A C 1 HETATM 107 O O . CYS A 1 8 ? -0.205 2.531 -11.316 1.00 0.00 ? 9 CYS A O 1 HETATM 108 C CB . CYS A 1 8 ? -0.346 3.646 -8.522 1.00 0.00 ? 9 CYS A CB 1 HETATM 109 S SG . CYS A 1 8 ? 0.935 4.927 -8.744 1.00 0.00 ? 9 CYS A SG 1 HETATM 110 H H . CYS A 1 8 ? -2.723 2.076 -10.188 1.00 0.00 ? 9 CYS A H 1 HETATM 111 H HA . CYS A 1 8 ? -1.880 4.788 -9.535 1.00 0.00 ? 9 CYS A HA 1 HETATM 112 H HB2 . CYS A 1 8 ? -0.770 3.761 -7.508 1.00 0.00 ? 9 CYS A HB2 1 HETATM 113 H HB3 . CYS A 1 8 ? 0.134 2.650 -8.542 1.00 0.00 ? 9 CYS A HB3 1 HETATM 114 H HG . CYS A 1 8 ? 0.147 5.972 -8.505 1.00 0.00 ? 9 CYS A HG 1 HETATM 115 N N . NH2 A 1 9 ? -0.931 4.540 -11.902 1.00 0.00 ? 10 NH2 A N 1 HETATM 116 H HN1 . NH2 A 1 9 ? -0.505 4.379 -12.821 1.00 0.00 ? 10 NH2 A HN1 1 HETATM 117 H HN2 . NH2 A 1 9 ? -1.442 5.376 -11.599 1.00 0.00 ? 10 NH2 A HN2 1 HETATM 118 C C1 . DXX B 2 . ? 1.581 -7.071 2.381 1.00 0.00 ? 1 DXX A C1 1 HETATM 119 O O1 . DXX B 2 . ? 2.428 -7.185 3.458 1.00 0.00 ? 1 DXX A O1 1 HETATM 120 O OXT . DXX B 2 . ? 0.448 -7.552 2.342 1.00 0.00 ? 1 DXX A OXT 1 HETATM 121 C CA . DXX B 2 . ? 2.189 -6.266 1.213 1.00 0.00 ? 1 DXX A CA 1 HETATM 122 C CB . DXX B 2 . ? 3.510 -6.874 0.699 1.00 0.00 ? 1 DXX A CB 1 HETATM 123 C C . DXX B 2 . ? 2.347 -4.770 1.595 1.00 0.00 ? 1 DXX A C 1 HETATM 124 O O . DXX B 2 . ? 3.199 -4.418 2.420 1.00 0.00 ? 1 DXX A O 1 HETATM 125 H H1 . DXX B 2 . ? 3.267 -6.743 3.304 1.00 0.00 ? 1 DXX A H1 1 HETATM 126 H HA . DXX B 2 . ? 1.477 -6.356 0.368 1.00 0.00 ? 1 DXX A HA 1 HETATM 127 H HB1 . DXX B 2 . ? 3.894 -6.326 -0.181 1.00 0.00 ? 1 DXX A HB1 1 HETATM 128 H HB2 . DXX B 2 . ? 3.378 -7.928 0.388 1.00 0.00 ? 1 DXX A HB2 1 HETATM 129 H HB3 . DXX B 2 . ? 4.307 -6.857 1.467 1.00 0.00 ? 1 DXX A HB3 1
spin
Assembly
Assembly ID: 1cw8_1
Assembly defined by
: Author
PDB ID
:
1cw8
Experimental method
: SOLUTION NMR
Resolution
: N/A
UniProt ID
: N/A
PubMed ID
:
11341837
Ligand 1
:
DXX
Ligand 2
:
III
Download
mmCIF Format
PDB Format
Ligand ID
NUC pairing detail
Ligand Name
Synonyms
Formula
2D structure
DXX
N/A
Methylmalonic acid
1: 2-methylmalonic acid; 2: Alpha-methylmalonic acid; 3: Methylpropanedioic acid; 4: 1,1-ethanedicarboxylic acid; 5: Isosuccinic acid;
"C4 H6 O4"
III
N/A
Peptide
N/A
"C14 H18 N4"
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)
