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Yang Lab
Function Annotation for BL3153154
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data_1agl_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 O "O5'" . DC A 1 1 ? 8.502 19.354 23.546 1.00 21.94 ? 1 DC A "O5'" 1 HETATM 2 C "C5'" . DC A 1 1 ? 9.070 20.429 24.302 1.00 16.63 ? 1 DC A "C5'" 1 HETATM 3 C "C4'" . DC A 1 1 ? 10.542 20.221 24.701 1.00 18.84 ? 1 DC A "C4'" 1 HETATM 4 O "O4'" . DC A 1 1 ? 10.767 19.021 25.470 1.00 12.77 ? 1 DC A "O4'" 1 HETATM 5 C "C3'" . DC A 1 1 ? 11.454 20.193 23.484 1.00 18.81 ? 1 DC A "C3'" 1 HETATM 6 O "O3'" . DC A 1 1 ? 12.523 21.099 23.753 1.00 23.77 ? 1 DC A "O3'" 1 HETATM 7 C "C2'" . DC A 1 1 ? 11.893 18.739 23.440 1.00 15.12 ? 1 DC A "C2'" 1 HETATM 8 C "C1'" . DC A 1 1 ? 11.810 18.251 24.879 1.00 12.90 ? 1 DC A "C1'" 1 HETATM 9 N N1 . DC A 1 1 ? 11.408 16.840 24.975 1.00 13.97 ? 1 DC A N1 1 HETATM 10 C C2 . DC A 1 1 ? 12.383 15.863 25.121 1.00 10.17 ? 1 DC A C2 1 HETATM 11 O O2 . DC A 1 1 ? 13.577 16.125 25.196 1.00 9.00 ? 1 DC A O2 1 HETATM 12 N N3 . DC A 1 1 ? 12.003 14.568 25.189 1.00 10.22 ? 1 DC A N3 1 HETATM 13 C C4 . DC A 1 1 ? 10.714 14.257 25.138 1.00 6.53 ? 1 DC A C4 1 HETATM 14 N N4 . DC A 1 1 ? 10.390 12.993 25.207 1.00 11.82 ? 1 DC A N4 1 HETATM 15 C C5 . DC A 1 1 ? 9.685 15.235 24.998 1.00 12.34 ? 1 DC A C5 1 HETATM 16 C C6 . DC A 1 1 ? 10.086 16.518 24.914 1.00 9.72 ? 1 DC A C6 1 HETATM 17 P P . DG A 1 2 ? 12.945 22.222 22.687 1.00 26.09 ? 2 DG A P 1 HETATM 18 O OP1 . DG A 1 2 ? 13.930 23.098 23.354 1.00 26.89 ? 2 DG A OP1 1 HETATM 19 O OP2 . DG A 1 2 ? 11.731 22.825 22.086 1.00 28.36 ? 2 DG A OP2 1 HETATM 20 O "O5'" . DG A 1 2 ? 13.690 21.362 21.546 1.00 27.59 ? 2 DG A "O5'" 1 HETATM 21 C "C5'" . DG A 1 2 ? 15.046 20.874 21.704 1.00 24.61 ? 2 DG A "C5'" 1 HETATM 22 C "C4'" . DG A 1 2 ? 15.583 20.024 20.523 1.00 23.60 ? 2 DG A "C4'" 1 HETATM 23 O "O4'" . DG A 1 2 ? 14.872 18.779 20.379 1.00 22.26 ? 2 DG A "O4'" 1 HETATM 24 C "C3'" . DG A 1 2 ? 15.431 20.792 19.194 1.00 21.88 ? 2 DG A "C3'" 1 HETATM 25 O "O3'" . DG A 1 2 ? 16.631 20.728 18.409 1.00 27.23 ? 2 DG A "O3'" 1 HETATM 26 C "C2'" . DG A 1 2 ? 14.300 20.050 18.533 1.00 19.18 ? 2 DG A "C2'" 1 HETATM 27 C "C1'" . DG A 1 2 ? 14.546 18.634 18.987 1.00 15.61 ? 2 DG A "C1'" 1 HETATM 28 N N9 . DG A 1 2 ? 13.397 17.743 18.821 1.00 7.33 ? 2 DG A N9 1 HETATM 29 C C8 . DG A 1 2 ? 12.065 18.010 18.830 1.00 7.79 ? 2 DG A C8 1 HETATM 30 N N7 . DG A 1 2 ? 11.301 16.960 18.679 1.00 6.65 ? 2 DG A N7 1 HETATM 31 C C5 . DG A 1 2 ? 12.220 15.919 18.597 1.00 2.35 ? 2 DG A C5 1 HETATM 32 C C6 . DG A 1 2 ? 12.007 14.541 18.430 1.00 6.98 ? 2 DG A C6 1 HETATM 33 O O6 . DG A 1 2 ? 10.927 13.965 18.342 1.00 9.54 ? 2 DG A O6 1 HETATM 34 N N1 . DG A 1 2 ? 13.198 13.834 18.391 1.00 6.90 ? 2 DG A N1 1 HETATM 35 C C2 . DG A 1 2 ? 14.440 14.407 18.504 1.00 9.83 ? 2 DG A C2 1 HETATM 36 N N2 . DG A 1 2 ? 15.495 13.626 18.482 1.00 2.85 ? 2 DG A N2 1 HETATM 37 N N3 . DG A 1 2 ? 14.644 15.699 18.663 1.00 2.01 ? 2 DG A N3 1 HETATM 38 C C4 . DG A 1 2 ? 13.494 16.392 18.691 1.00 7.39 ? 2 DG A C4 1 HETATM 39 P P . DA A 1 3 ? 17.534 22.042 18.075 1.00 31.53 ? 3 DA A P 1 HETATM 40 O OP1 . DA A 1 3 ? 18.073 22.637 19.330 1.00 31.06 ? 3 DA A OP1 1 HETATM 41 O OP2 . DA A 1 3 ? 16.788 22.883 17.101 1.00 28.99 ? 3 DA A OP2 1 HETATM 42 O "O5'" . DA A 1 3 ? 18.740 21.338 17.289 1.00 30.21 ? 3 DA A "O5'" 1 HETATM 43 C "C5'" . DA A 1 3 ? 19.598 20.449 17.996 1.00 23.22 ? 3 DA A "C5'" 1 HETATM 44 C "C4'" . DA A 1 3 ? 19.851 19.155 17.237 1.00 18.82 ? 3 DA A "C4'" 1 HETATM 45 O "O4'" . DA A 1 3 ? 18.702 18.301 17.146 1.00 16.53 ? 3 DA A "O4'" 1 HETATM 46 C "C3'" . DA A 1 3 ? 20.327 19.447 15.844 1.00 15.71 ? 3 DA A "C3'" 1 HETATM 47 O "O3'" . DA A 1 3 ? 21.510 18.681 15.644 1.00 16.92 ? 3 DA A "O3'" 1 HETATM 48 C "C2'" . DA A 1 3 ? 19.183 18.974 14.996 1.00 15.63 ? 3 DA A "C2'" 1 HETATM 49 C "C1'" . DA A 1 3 ? 18.517 17.870 15.805 1.00 16.07 ? 3 DA A "C1'" 1 HETATM 50 N N9 . DA A 1 3 ? 17.060 17.826 15.615 1.00 14.70 ? 3 DA A N9 1 HETATM 51 C C8 . DA A 1 3 ? 16.165 18.859 15.615 1.00 14.07 ? 3 DA A C8 1 HETATM 52 N N7 . DA A 1 3 ? 14.929 18.497 15.442 1.00 12.78 ? 3 DA A N7 1 HETATM 53 C C5 . DA A 1 3 ? 15.020 17.118 15.366 1.00 11.98 ? 3 DA A C5 1 HETATM 54 C C6 . DA A 1 3 ? 14.058 16.132 15.186 1.00 15.93 ? 3 DA A C6 1 HETATM 55 N N6 . DA A 1 3 ? 12.766 16.399 15.060 1.00 15.90 ? 3 DA A N6 1 HETATM 56 N N1 . DA A 1 3 ? 14.467 14.875 15.128 1.00 12.49 ? 3 DA A N1 1 HETATM 57 C C2 . DA A 1 3 ? 15.764 14.625 15.271 1.00 12.30 ? 3 DA A C2 1 HETATM 58 N N3 . DA A 1 3 ? 16.781 15.447 15.434 1.00 16.40 ? 3 DA A N3 1 HETATM 59 C C4 . DA A 1 3 ? 16.313 16.704 15.485 1.00 13.83 ? 3 DA A C4 1 HETATM 60 P P . DT A 1 4 ? 22.364 18.806 14.300 1.00 18.81 ? 4 DT A P 1 HETATM 61 O OP1 . DT A 1 4 ? 23.797 18.603 14.624 1.00 21.11 ? 4 DT A OP1 1 HETATM 62 O OP2 . DT A 1 4 ? 21.907 20.015 13.566 1.00 13.70 ? 4 DT A OP2 1 HETATM 63 O "O5'" . DT A 1 4 ? 21.856 17.562 13.477 1.00 16.62 ? 4 DT A "O5'" 1 HETATM 64 C "C5'" . DT A 1 4 ? 22.036 16.232 13.982 1.00 15.93 ? 4 DT A "C5'" 1 HETATM 65 C "C4'" . DT A 1 4 ? 21.125 15.259 13.240 1.00 13.91 ? 4 DT A "C4'" 1 HETATM 66 O "O4'" . DT A 1 4 ? 19.757 15.675 13.300 1.00 15.60 ? 4 DT A "O4'" 1 HETATM 67 C "C3'" . DT A 1 4 ? 21.474 15.256 11.760 1.00 11.48 ? 4 DT A "C3'" 1 HETATM 68 O "O3'" . DT A 1 4 ? 22.373 14.183 11.534 1.00 17.80 ? 4 DT A "O3'" 1 HETATM 69 C "C2'" . DT A 1 4 ? 20.139 15.109 11.089 1.00 9.95 ? 4 DT A "C2'" 1 HETATM 70 C "C1'" . DT A 1 4 ? 19.124 15.003 12.199 1.00 12.47 ? 4 DT A "C1'" 1 HETATM 71 N N1 . DT A 1 4 ? 17.832 15.692 12.010 1.00 10.28 ? 4 DT A N1 1 HETATM 72 C C2 . DT A 1 4 ? 16.692 14.931 11.920 1.00 11.51 ? 4 DT A C2 1 HETATM 73 O O2 . DT A 1 4 ? 16.676 13.723 11.910 1.00 13.83 ? 4 DT A O2 1 HETATM 74 N N3 . DT A 1 4 ? 15.504 15.582 11.817 1.00 15.02 ? 4 DT A N3 1 HETATM 75 C C4 . DT A 1 4 ? 15.342 16.937 11.797 1.00 13.07 ? 4 DT A C4 1 HETATM 76 O O4 . DT A 1 4 ? 14.210 17.389 11.674 1.00 15.33 ? 4 DT A O4 1 HETATM 77 C C5 . DT A 1 4 ? 16.572 17.683 11.910 1.00 10.85 ? 4 DT A C5 1 HETATM 78 C C7 . DT A 1 4 ? 16.559 19.213 11.870 1.00 12.24 ? 4 DT A C7 1 HETATM 79 C C6 . DT A 1 4 ? 17.749 17.054 12.020 1.00 9.06 ? 4 DT A C6 1 HETATM 80 P P . DC A 1 5 ? 23.588 14.250 10.489 1.00 24.72 ? 5 DC A P 1 HETATM 81 O OP1 . DC A 1 5 ? 24.604 13.267 10.939 1.00 27.14 ? 5 DC A OP1 1 HETATM 82 O OP2 . DC A 1 5 ? 23.967 15.656 10.199 1.00 25.23 ? 5 DC A OP2 1 HETATM 83 O "O5'" . DC A 1 5 ? 22.883 13.702 9.170 1.00 22.42 ? 5 DC A "O5'" 1 HETATM 84 C "C5'" . DC A 1 5 ? 22.488 12.335 9.065 1.00 17.60 ? 5 DC A "C5'" 1 HETATM 85 C "C4'" . DC A 1 5 ? 21.344 12.155 8.081 1.00 16.50 ? 5 DC A "C4'" 1 HETATM 86 O "O4'" . DC A 1 5 ? 20.231 12.969 8.519 1.00 12.38 ? 5 DC A "O4'" 1 HETATM 87 C "C3'" . DC A 1 5 ? 21.697 12.530 6.641 1.00 13.96 ? 5 DC A "C3'" 1 HETATM 88 O "O3'" . DC A 1 5 ? 21.133 11.578 5.761 1.00 17.70 ? 5 DC A "O3'" 1 HETATM 89 C "C2'" . DC A 1 5 ? 20.900 13.792 6.477 1.00 10.61 ? 5 DC A "C2'" 1 HETATM 90 C "C1'" . DC A 1 5 ? 19.687 13.563 7.366 1.00 11.66 ? 5 DC A "C1'" 1 HETATM 91 N N1 . DC A 1 5 ? 18.956 14.787 7.738 1.00 9.19 ? 5 DC A N1 1 HETATM 92 C C2 . DC A 1 5 ? 17.638 14.683 8.071 1.00 5.97 ? 5 DC A C2 1 HETATM 93 O O2 . DC A 1 5 ? 17.036 13.622 8.095 1.00 10.61 ? 5 DC A O2 1 HETATM 94 N N3 . DC A 1 5 ? 16.947 15.797 8.354 1.00 11.36 ? 5 DC A N3 1 HETATM 95 C C4 . DC A 1 5 ? 17.535 16.980 8.344 1.00 12.57 ? 5 DC A C4 1 HETATM 96 N N4 . DC A 1 5 ? 16.807 18.055 8.631 1.00 11.51 ? 5 DC A N4 1 HETATM 97 C C5 . DC A 1 5 ? 18.915 17.112 8.036 1.00 13.44 ? 5 DC A C5 1 HETATM 98 C C6 . DC A 1 5 ? 19.578 15.983 7.722 1.00 10.55 ? 5 DC A C6 1 HETATM 99 P P . DG A 1 6 ? 22.034 10.655 4.838 1.00 22.85 ? 6 DG A P 1 HETATM 100 O OP1 . DG A 1 6 ? 22.656 9.602 5.694 1.00 18.10 ? 6 DG A OP1 1 HETATM 101 O OP2 . DG A 1 6 ? 22.893 11.545 4.005 1.00 14.77 ? 6 DG A OP2 1 HETATM 102 O "O5'" . DG A 1 6 ? 20.948 9.954 3.873 1.00 16.04 ? 6 DG A "O5'" 1 HETATM 103 C "C5'" . DG A 1 6 ? 20.006 9.039 4.425 1.00 15.69 ? 6 DG A "C5'" 1 HETATM 104 C "C4'" . DG A 1 6 ? 18.971 8.532 3.429 1.00 13.83 ? 6 DG A "C4'" 1 HETATM 105 O "O4'" . DG A 1 6 ? 17.983 9.508 3.023 1.00 14.10 ? 6 DG A "O4'" 1 HETATM 106 C "C3'" . DG A 1 6 ? 19.647 8.071 2.157 1.00 11.99 ? 6 DG A "C3'" 1 HETATM 107 O "O3'" . DG A 1 6 ? 18.907 6.985 1.630 1.00 17.17 ? 6 DG A "O3'" 1 HETATM 108 C "C2'" . DG A 1 6 ? 19.496 9.269 1.257 1.00 9.11 ? 6 DG A "C2'" 1 HETATM 109 C "C1'" . DG A 1 6 ? 18.146 9.877 1.643 1.00 7.05 ? 6 DG A "C1'" 1 HETATM 110 N N9 . DG A 1 6 ? 18.180 11.347 1.612 1.00 5.84 ? 6 DG A N9 1 HETATM 111 C C8 . DG A 1 6 ? 19.260 12.185 1.702 1.00 7.02 ? 6 DG A C8 1 HETATM 112 N N7 . DG A 1 6 ? 18.976 13.451 1.691 1.00 2.10 ? 6 DG A N7 1 HETATM 113 C C5 . DG A 1 6 ? 17.598 13.444 1.634 1.00 4.72 ? 6 DG A C5 1 HETATM 114 C C6 . DG A 1 6 ? 16.703 14.530 1.601 1.00 9.98 ? 6 DG A C6 1 HETATM 115 O O6 . DG A 1 6 ? 16.962 15.722 1.624 1.00 3.59 ? 6 DG A O6 1 HETATM 116 N N1 . DG A 1 6 ? 15.390 14.123 1.552 1.00 8.40 ? 6 DG A N1 1 HETATM 117 C C2 . DG A 1 6 ? 14.997 12.822 1.533 1.00 9.84 ? 6 DG A C2 1 HETATM 118 N N2 . DG A 1 6 ? 13.704 12.608 1.475 1.00 13.81 ? 6 DG A N2 1 HETATM 119 N N3 . DG A 1 6 ? 15.815 11.784 1.542 1.00 11.20 ? 6 DG A N3 1 HETATM 120 C C4 . DG A 1 6 ? 17.106 12.172 1.595 1.00 3.52 ? 6 DG A C4 1 HETATM 121 C C1 . BDA A 2 . ? 16.000 19.065 5.115 1.00 12.71 ? 7 BDA A C1 1 HETATM 122 C C2 . BDA A 2 . ? 17.112 19.838 5.052 1.00 15.25 ? 7 BDA A C2 1 HETATM 123 C C3 . BDA A 2 . ? 18.336 19.275 4.895 1.00 17.32 ? 7 BDA A C3 1 HETATM 124 C C4 . BDA A 2 . ? 18.456 17.816 4.793 1.00 20.92 ? 7 BDA A C4 1 HETATM 125 O O4 . BDA A 2 . ? 19.707 17.103 4.674 1.00 21.47 ? 7 BDA A O4 1 HETATM 126 C C5 . BDA A 2 . ? 17.265 16.997 4.876 1.00 12.54 ? 7 BDA A C5 1 HETATM 127 C C6 . BDA A 2 . ? 17.333 15.560 4.813 1.00 11.38 ? 7 BDA A C6 1 HETATM 128 O O6 . BDA A 2 . ? 18.405 15.003 4.688 1.00 12.12 ? 7 BDA A O6 1 HETATM 129 C C7 . BDA A 2 . ? 16.094 14.841 4.913 1.00 9.33 ? 7 BDA A C7 1 HETATM 130 C C8 . BDA A 2 . ? 16.114 13.411 4.856 1.00 8.26 ? 7 BDA A C8 1 HETATM 131 O O8 . BDA A 2 . ? 17.285 12.740 4.689 1.00 11.07 ? 7 BDA A O8 1 HETATM 132 C C9 . BDA A 2 . ? 14.899 12.677 4.896 1.00 7.22 ? 7 BDA A C9 1 HETATM 133 C C10 . BDA A 2 . ? 14.996 11.195 4.902 1.00 7.42 ? 7 BDA A C10 1 HETATM 134 O O10 . BDA A 2 . ? 15.549 10.849 6.191 1.00 14.24 ? 7 BDA A O10 1 HETATM 135 C C11 . BDA A 2 . ? 13.630 10.484 4.709 1.00 2.78 ? 7 BDA A C11 1 HETATM 136 C C12 . BDA A 2 . ? 12.565 11.145 5.570 1.00 5.10 ? 7 BDA A C12 1 HETATM 137 O O12 . BDA A 2 . ? 12.934 11.091 6.959 1.00 12.28 ? 7 BDA A O12 1 HETATM 138 C C13 . BDA A 2 . ? 11.238 10.429 5.350 1.00 12.64 ? 7 BDA A C13 1 HETATM 139 O O13 . BDA A 2 . ? 10.520 10.676 4.375 1.00 23.18 ? 7 BDA A O13 1 HETATM 140 C C14 . BDA A 2 . ? 10.832 9.347 6.340 1.00 11.57 ? 7 BDA A C14 1 HETATM 141 C C15 . BDA A 2 . ? 12.396 12.579 5.106 1.00 2.80 ? 7 BDA A C15 1 HETATM 142 C C16 . BDA A 2 . ? 13.694 13.347 5.041 1.00 8.24 ? 7 BDA A C16 1 HETATM 143 C C17 . BDA A 2 . ? 13.675 14.777 5.110 1.00 9.04 ? 7 BDA A C17 1 HETATM 144 O O17 . BDA A 2 . ? 12.519 15.480 5.236 1.00 16.01 ? 7 BDA A O17 1 HETATM 145 C C18 . BDA A 2 . ? 14.890 15.509 5.044 1.00 10.93 ? 7 BDA A C18 1 HETATM 146 C C19 . BDA A 2 . ? 14.819 16.940 5.110 1.00 13.27 ? 7 BDA A C19 1 HETATM 147 O O19 . BDA A 2 . ? 13.770 17.572 5.229 1.00 15.89 ? 7 BDA A O19 1 HETATM 148 C C20 . BDA A 2 . ? 16.051 17.654 5.030 1.00 13.16 ? 7 BDA A C20 1 HETATM 149 C C21 . BDA A 2 . ? 20.942 17.717 4.588 1.00 28.12 ? 7 BDA A C21 1 HETATM 150 C "C1'" . BDA A 2 . ? 16.743 10.049 6.188 1.00 12.83 ? 7 BDA A "C1'" 1 HETATM 151 C "C2'" . BDA A 2 . ? 17.456 10.099 7.549 1.00 15.30 ? 7 BDA A "C2'" 1 HETATM 152 C "C3'" . BDA A 2 . ? 16.628 9.429 8.658 1.00 17.84 ? 7 BDA A "C3'" 1 HETATM 153 N "N3'" . BDA A 2 . ? 17.478 9.558 9.840 1.00 22.41 ? 7 BDA A "N3'" 1 HETATM 154 C "C4'" . BDA A 2 . ? 16.280 7.960 8.260 1.00 17.28 ? 7 BDA A "C4'" 1 HETATM 155 O "O4'" . BDA A 2 . ? 17.413 7.036 8.227 1.00 18.11 ? 7 BDA A "O4'" 1 HETATM 156 C "C5'" . BDA A 2 . ? 15.604 8.009 6.873 1.00 15.91 ? 7 BDA A "C5'" 1 HETATM 157 O "O5'" . BDA A 2 . ? 16.399 8.693 5.853 1.00 13.96 ? 7 BDA A "O5'" 1 HETATM 158 C "C6'" . BDA A 2 . ? 15.321 6.584 6.422 1.00 16.41 ? 7 BDA A "C6'" 1 HETATM 159 C "C7'" . BDA A 2 . ? 16.806 9.081 11.034 1.00 30.90 ? 7 BDA A "C7'" 1 HETATM 160 C "C8'" . BDA A 2 . ? 17.458 9.663 12.277 1.00 37.32 ? 7 BDA A "C8'" 1 HETATM 161 C C9A . BDA A 2 . ? 16.880 10.840 12.888 0.50 38.09 ? 7 BDA A C9A 1 HETATM 162 C C9B . BDA A 2 . ? 18.650 9.076 12.882 0.50 43.55 ? 7 BDA A C9B 1 HETATM 1 O "O5'" . DC B 1 1 ? 8.916 19.768 3.339 1.00 21.94 ? 1 DC B "O5'" 1 HETATM 2 C "C5'" . DC B 1 1 ? 7.841 19.200 2.583 1.00 16.63 ? 1 DC B "C5'" 1 HETATM 3 C "C4'" . DC B 1 1 ? 8.049 17.728 2.184 1.00 18.84 ? 1 DC B "C4'" 1 HETATM 4 O "O4'" . DC B 1 1 ? 9.249 17.503 1.415 1.00 12.77 ? 1 DC B "O4'" 1 HETATM 5 C "C3'" . DC B 1 1 ? 8.077 16.816 3.401 1.00 18.81 ? 1 DC B "C3'" 1 HETATM 6 O "O3'" . DC B 1 1 ? 7.171 15.747 3.132 1.00 23.77 ? 1 DC B "O3'" 1 HETATM 7 C "C2'" . DC B 1 1 ? 9.531 16.377 3.445 1.00 15.12 ? 1 DC B "C2'" 1 HETATM 8 C "C1'" . DC B 1 1 ? 10.019 16.460 2.006 1.00 12.90 ? 1 DC B "C1'" 1 HETATM 9 N N1 . DC B 1 1 ? 11.430 16.862 1.910 1.00 13.97 ? 1 DC B N1 1 HETATM 10 C C2 . DC B 1 1 ? 12.407 15.887 1.764 1.00 10.17 ? 1 DC B C2 1 HETATM 11 O O2 . DC B 1 1 ? 12.145 14.693 1.689 1.00 9.00 ? 1 DC B O2 1 HETATM 12 N N3 . DC B 1 1 ? 13.702 16.267 1.696 1.00 10.22 ? 1 DC B N3 1 HETATM 13 C C4 . DC B 1 1 ? 14.013 17.556 1.747 1.00 6.53 ? 1 DC B C4 1 HETATM 14 N N4 . DC B 1 1 ? 15.277 17.880 1.678 1.00 11.82 ? 1 DC B N4 1 HETATM 15 C C5 . DC B 1 1 ? 13.035 18.585 1.887 1.00 12.34 ? 1 DC B C5 1 HETATM 16 C C6 . DC B 1 1 ? 11.752 18.184 1.971 1.00 9.72 ? 1 DC B C6 1 HETATM 17 P P . DG B 1 2 ? 6.048 15.325 4.198 1.00 26.09 ? 2 DG B P 1 HETATM 18 O OP1 . DG B 1 2 ? 5.172 14.340 3.531 1.00 26.89 ? 2 DG B OP1 1 HETATM 19 O OP2 . DG B 1 2 ? 5.445 16.539 4.799 1.00 28.36 ? 2 DG B OP2 1 HETATM 20 O "O5'" . DG B 1 2 ? 6.908 14.580 5.339 1.00 27.59 ? 2 DG B "O5'" 1 HETATM 21 C "C5'" . DG B 1 2 ? 7.396 13.224 5.181 1.00 24.61 ? 2 DG B "C5'" 1 HETATM 22 C "C4'" . DG B 1 2 ? 8.246 12.687 6.362 1.00 23.60 ? 2 DG B "C4'" 1 HETATM 23 O "O4'" . DG B 1 2 ? 9.491 13.398 6.506 1.00 22.26 ? 2 DG B "O4'" 1 HETATM 24 C "C3'" . DG B 1 2 ? 7.478 12.839 7.691 1.00 21.88 ? 2 DG B "C3'" 1 HETATM 25 O "O3'" . DG B 1 2 ? 7.542 11.639 8.476 1.00 27.23 ? 2 DG B "O3'" 1 HETATM 26 C "C2'" . DG B 1 2 ? 8.220 13.970 8.352 1.00 19.18 ? 2 DG B "C2'" 1 HETATM 27 C "C1'" . DG B 1 2 ? 9.636 13.724 7.898 1.00 15.61 ? 2 DG B "C1'" 1 HETATM 28 N N9 . DG B 1 2 ? 10.527 14.873 8.064 1.00 7.33 ? 2 DG B N9 1 HETATM 29 C C8 . DG B 1 2 ? 10.260 16.205 8.055 1.00 7.79 ? 2 DG B C8 1 HETATM 30 N N7 . DG B 1 2 ? 11.310 16.969 8.206 1.00 6.65 ? 2 DG B N7 1 HETATM 31 C C5 . DG B 1 2 ? 12.351 16.050 8.288 1.00 2.35 ? 2 DG B C5 1 HETATM 32 C C6 . DG B 1 2 ? 13.729 16.263 8.455 1.00 6.98 ? 2 DG B C6 1 HETATM 33 O O6 . DG B 1 2 ? 14.305 17.343 8.543 1.00 9.54 ? 2 DG B O6 1 HETATM 34 N N1 . DG B 1 2 ? 14.436 15.072 8.494 1.00 6.90 ? 2 DG B N1 1 HETATM 35 C C2 . DG B 1 2 ? 13.863 13.830 8.381 1.00 9.83 ? 2 DG B C2 1 HETATM 36 N N2 . DG B 1 2 ? 14.644 12.775 8.403 1.00 2.85 ? 2 DG B N2 1 HETATM 37 N N3 . DG B 1 2 ? 12.571 13.626 8.222 1.00 2.01 ? 2 DG B N3 1 HETATM 38 C C4 . DG B 1 2 ? 11.878 14.776 8.194 1.00 7.39 ? 2 DG B C4 1 HETATM 39 P P . DA B 1 3 ? 6.228 10.736 8.810 1.00 31.53 ? 3 DA B P 1 HETATM 40 O OP1 . DA B 1 3 ? 5.633 10.197 7.555 1.00 31.06 ? 3 DA B OP1 1 HETATM 41 O OP2 . DA B 1 3 ? 5.387 11.482 9.784 1.00 28.99 ? 3 DA B OP2 1 HETATM 42 O "O5'" . DA B 1 3 ? 6.932 9.530 9.596 1.00 30.21 ? 3 DA B "O5'" 1 HETATM 43 C "C5'" . DA B 1 3 ? 7.821 8.672 8.889 1.00 23.22 ? 3 DA B "C5'" 1 HETATM 44 C "C4'" . DA B 1 3 ? 9.115 8.419 9.648 1.00 18.82 ? 3 DA B "C4'" 1 HETATM 45 O "O4'" . DA B 1 3 ? 9.969 9.568 9.739 1.00 16.53 ? 3 DA B "O4'" 1 HETATM 46 C "C3'" . DA B 1 3 ? 8.823 7.943 11.041 1.00 15.71 ? 3 DA B "C3'" 1 HETATM 47 O "O3'" . DA B 1 3 ? 9.589 6.760 11.241 1.00 16.92 ? 3 DA B "O3'" 1 HETATM 48 C "C2'" . DA B 1 3 ? 9.296 9.087 11.889 1.00 15.63 ? 3 DA B "C2'" 1 HETATM 49 C "C1'" . DA B 1 3 ? 10.400 9.753 11.080 1.00 16.07 ? 3 DA B "C1'" 1 HETATM 50 N N9 . DA B 1 3 ? 10.444 11.210 11.270 1.00 14.70 ? 3 DA B N9 1 HETATM 51 C C8 . DA B 1 3 ? 9.411 12.105 11.270 1.00 14.07 ? 3 DA B C8 1 HETATM 52 N N7 . DA B 1 3 ? 9.773 13.341 11.443 1.00 12.78 ? 3 DA B N7 1 HETATM 53 C C5 . DA B 1 3 ? 11.152 13.250 11.519 1.00 11.98 ? 3 DA B C5 1 HETATM 54 C C6 . DA B 1 3 ? 12.138 14.212 11.699 1.00 15.93 ? 3 DA B C6 1 HETATM 55 N N6 . DA B 1 3 ? 11.871 15.504 11.825 1.00 15.90 ? 3 DA B N6 1 HETATM 56 N N1 . DA B 1 3 ? 13.395 13.803 11.757 1.00 12.49 ? 3 DA B N1 1 HETATM 57 C C2 . DA B 1 3 ? 13.645 12.506 11.614 1.00 12.30 ? 3 DA B C2 1 HETATM 58 N N3 . DA B 1 3 ? 12.823 11.489 11.451 1.00 16.40 ? 3 DA B N3 1 HETATM 59 C C4 . DA B 1 3 ? 11.566 11.957 11.400 1.00 13.83 ? 3 DA B C4 1 HETATM 60 P P . DT B 1 4 ? 9.464 5.906 12.585 1.00 18.81 ? 4 DT B P 1 HETATM 61 O OP1 . DT B 1 4 ? 9.667 4.473 12.261 1.00 21.11 ? 4 DT B OP1 1 HETATM 62 O OP2 . DT B 1 4 ? 8.255 6.363 13.319 1.00 13.70 ? 4 DT B OP2 1 HETATM 63 O "O5'" . DT B 1 4 ? 10.708 6.414 13.408 1.00 16.62 ? 4 DT B "O5'" 1 HETATM 64 C "C5'" . DT B 1 4 ? 12.038 6.234 12.903 1.00 15.93 ? 4 DT B "C5'" 1 HETATM 65 C "C4'" . DT B 1 4 ? 13.011 7.145 13.645 1.00 13.91 ? 4 DT B "C4'" 1 HETATM 66 O "O4'" . DT B 1 4 ? 12.595 8.513 13.585 1.00 15.60 ? 4 DT B "O4'" 1 HETATM 67 C "C3'" . DT B 1 4 ? 13.014 6.796 15.125 1.00 11.48 ? 4 DT B "C3'" 1 HETATM 68 O "O3'" . DT B 1 4 ? 14.087 5.897 15.351 1.00 17.80 ? 4 DT B "O3'" 1 HETATM 69 C "C2'" . DT B 1 4 ? 13.161 8.131 15.796 1.00 9.95 ? 4 DT B "C2'" 1 HETATM 70 C "C1'" . DT B 1 4 ? 13.267 9.146 14.686 1.00 12.47 ? 4 DT B "C1'" 1 HETATM 71 N N1 . DT B 1 4 ? 12.578 10.438 14.875 1.00 10.28 ? 4 DT B N1 1 HETATM 72 C C2 . DT B 1 4 ? 13.339 11.578 14.965 1.00 11.51 ? 4 DT B C2 1 HETATM 73 O O2 . DT B 1 4 ? 14.547 11.594 14.975 1.00 13.83 ? 4 DT B O2 1 HETATM 74 N N3 . DT B 1 4 ? 12.688 12.766 15.068 1.00 15.02 ? 4 DT B N3 1 HETATM 75 C C4 . DT B 1 4 ? 11.333 12.928 15.088 1.00 13.07 ? 4 DT B C4 1 HETATM 76 O O4 . DT B 1 4 ? 10.881 14.060 15.211 1.00 15.33 ? 4 DT B O4 1 HETATM 77 C C5 . DT B 1 4 ? 10.587 11.698 14.975 1.00 10.85 ? 4 DT B C5 1 HETATM 78 C C7 . DT B 1 4 ? 9.057 11.711 15.015 1.00 12.24 ? 4 DT B C7 1 HETATM 79 C C6 . DT B 1 4 ? 11.216 10.521 14.865 1.00 9.06 ? 4 DT B C6 1 HETATM 80 P P . DC B 1 5 ? 14.020 4.682 16.396 1.00 24.72 ? 5 DC B P 1 HETATM 81 O OP1 . DC B 1 5 ? 15.003 3.666 15.946 1.00 27.14 ? 5 DC B OP1 1 HETATM 82 O OP2 . DC B 1 5 ? 12.614 4.303 16.686 1.00 25.23 ? 5 DC B OP2 1 HETATM 83 O "O5'" . DC B 1 5 ? 14.568 5.387 17.715 1.00 22.42 ? 5 DC B "O5'" 1 HETATM 84 C "C5'" . DC B 1 5 ? 15.935 5.782 17.820 1.00 17.60 ? 5 DC B "C5'" 1 HETATM 85 C "C4'" . DC B 1 5 ? 16.115 6.926 18.804 1.00 16.50 ? 5 DC B "C4'" 1 HETATM 86 O "O4'" . DC B 1 5 ? 15.301 8.039 18.366 1.00 12.38 ? 5 DC B "O4'" 1 HETATM 87 C "C3'" . DC B 1 5 ? 15.740 6.573 20.244 1.00 13.96 ? 5 DC B "C3'" 1 HETATM 88 O "O3'" . DC B 1 5 ? 16.692 7.137 21.124 1.00 17.70 ? 5 DC B "O3'" 1 HETATM 89 C "C2'" . DC B 1 5 ? 14.478 7.370 20.408 1.00 10.61 ? 5 DC B "C2'" 1 HETATM 90 C "C1'" . DC B 1 5 ? 14.707 8.583 19.519 1.00 11.66 ? 5 DC B "C1'" 1 HETATM 91 N N1 . DC B 1 5 ? 13.483 9.314 19.147 1.00 9.19 ? 5 DC B N1 1 HETATM 92 C C2 . DC B 1 5 ? 13.587 10.632 18.814 1.00 5.97 ? 5 DC B C2 1 HETATM 93 O O2 . DC B 1 5 ? 14.648 11.234 18.790 1.00 10.61 ? 5 DC B O2 1 HETATM 94 N N3 . DC B 1 5 ? 12.473 11.323 18.531 1.00 11.36 ? 5 DC B N3 1 HETATM 95 C C4 . DC B 1 5 ? 11.290 10.735 18.541 1.00 12.57 ? 5 DC B C4 1 HETATM 96 N N4 . DC B 1 5 ? 10.215 11.463 18.254 1.00 11.51 ? 5 DC B N4 1 HETATM 97 C C5 . DC B 1 5 ? 11.158 9.355 18.849 1.00 13.44 ? 5 DC B C5 1 HETATM 98 C C6 . DC B 1 5 ? 12.287 8.692 19.163 1.00 10.55 ? 5 DC B C6 1 HETATM 99 P P . DG B 1 6 ? 17.615 6.236 22.047 1.00 22.85 ? 6 DG B P 1 HETATM 100 O OP1 . DG B 1 6 ? 18.668 5.614 21.191 1.00 18.10 ? 6 DG B OP1 1 HETATM 101 O OP2 . DG B 1 6 ? 16.725 5.377 22.880 1.00 14.77 ? 6 DG B OP2 1 HETATM 102 O "O5'" . DG B 1 6 ? 18.316 7.322 23.012 1.00 16.04 ? 6 DG B "O5'" 1 HETATM 103 C "C5'" . DG B 1 6 ? 19.231 8.264 22.460 1.00 15.69 ? 6 DG B "C5'" 1 HETATM 104 C "C4'" . DG B 1 6 ? 19.738 9.299 23.456 1.00 13.83 ? 6 DG B "C4'" 1 HETATM 105 O "O4'" . DG B 1 6 ? 18.762 10.287 23.862 1.00 14.10 ? 6 DG B "O4'" 1 HETATM 106 C "C3'" . DG B 1 6 ? 20.199 8.623 24.728 1.00 11.99 ? 6 DG B "C3'" 1 HETATM 107 O "O3'" . DG B 1 6 ? 21.285 9.363 25.255 1.00 17.17 ? 6 DG B "O3'" 1 HETATM 108 C "C2'" . DG B 1 6 ? 19.001 8.774 25.628 1.00 9.11 ? 6 DG B "C2'" 1 HETATM 109 C "C1'" . DG B 1 6 ? 18.393 10.124 25.242 1.00 7.05 ? 6 DG B "C1'" 1 HETATM 110 N N9 . DG B 1 6 ? 16.923 10.090 25.273 1.00 5.84 ? 6 DG B N9 1 HETATM 111 C C8 . DG B 1 6 ? 16.085 9.010 25.183 1.00 7.02 ? 6 DG B C8 1 HETATM 112 N N7 . DG B 1 6 ? 14.819 9.294 25.194 1.00 2.10 ? 6 DG B N7 1 HETATM 113 C C5 . DG B 1 6 ? 14.826 10.672 25.251 1.00 4.72 ? 6 DG B C5 1 HETATM 114 C C6 . DG B 1 6 ? 13.740 11.567 25.284 1.00 9.98 ? 6 DG B C6 1 HETATM 115 O O6 . DG B 1 6 ? 12.548 11.308 25.261 1.00 3.59 ? 6 DG B O6 1 HETATM 116 N N1 . DG B 1 6 ? 14.147 12.880 25.333 1.00 8.40 ? 6 DG B N1 1 HETATM 117 C C2 . DG B 1 6 ? 15.448 13.273 25.352 1.00 9.84 ? 6 DG B C2 1 HETATM 118 N N2 . DG B 1 6 ? 15.662 14.566 25.410 1.00 13.81 ? 6 DG B N2 1 HETATM 119 N N3 . DG B 1 6 ? 16.486 12.455 25.343 1.00 11.20 ? 6 DG B N3 1 HETATM 120 C C4 . DG B 1 6 ? 16.098 11.164 25.290 1.00 3.52 ? 6 DG B C4 1 HETATM 121 C C1 . BDA B 2 . ? 9.205 12.270 21.770 1.00 12.71 ? 7 BDA B C1 1 HETATM 122 C C2 . BDA B 2 . ? 8.432 11.158 21.833 1.00 15.25 ? 7 BDA B C2 1 HETATM 123 C C3 . BDA B 2 . ? 8.995 9.934 21.990 1.00 17.32 ? 7 BDA B C3 1 HETATM 124 C C4 . BDA B 2 . ? 10.454 9.814 22.092 1.00 20.92 ? 7 BDA B C4 1 HETATM 125 O O4 . BDA B 2 . ? 11.167 8.563 22.211 1.00 21.47 ? 7 BDA B O4 1 HETATM 126 C C5 . BDA B 2 . ? 11.273 11.005 22.009 1.00 12.54 ? 7 BDA B C5 1 HETATM 127 C C6 . BDA B 2 . ? 12.710 10.937 22.072 1.00 11.38 ? 7 BDA B C6 1 HETATM 128 O O6 . BDA B 2 . ? 13.267 9.865 22.197 1.00 12.12 ? 7 BDA B O6 1 HETATM 129 C C7 . BDA B 2 . ? 13.429 12.176 21.972 1.00 9.33 ? 7 BDA B C7 1 HETATM 130 C C8 . BDA B 2 . ? 14.859 12.156 22.029 1.00 8.26 ? 7 BDA B C8 1 HETATM 131 O O8 . BDA B 2 . ? 15.530 10.985 22.196 1.00 11.07 ? 7 BDA B O8 1 HETATM 132 C C9 . BDA B 2 . ? 15.593 13.371 21.989 1.00 7.22 ? 7 BDA B C9 1 HETATM 133 C C10 . BDA B 2 . ? 17.075 13.274 21.983 1.00 7.42 ? 7 BDA B C10 1 HETATM 134 O O10 . BDA B 2 . ? 17.421 12.721 20.694 1.00 14.24 ? 7 BDA B O10 1 HETATM 135 C C11 . BDA B 2 . ? 17.786 14.640 22.176 1.00 2.78 ? 7 BDA B C11 1 HETATM 136 C C12 . BDA B 2 . ? 17.125 15.705 21.315 1.00 5.10 ? 7 BDA B C12 1 HETATM 137 O O12 . BDA B 2 . ? 17.179 15.336 19.926 1.00 12.28 ? 7 BDA B O12 1 HETATM 138 C C13 . BDA B 2 . ? 17.841 17.032 21.535 1.00 12.64 ? 7 BDA B C13 1 HETATM 139 O O13 . BDA B 2 . ? 17.594 17.750 22.510 1.00 23.18 ? 7 BDA B O13 1 HETATM 140 C C14 . BDA B 2 . ? 18.923 17.438 20.545 1.00 11.57 ? 7 BDA B C14 1 HETATM 141 C C15 . BDA B 2 . ? 15.691 15.874 21.779 1.00 2.80 ? 7 BDA B C15 1 HETATM 142 C C16 . BDA B 2 . ? 14.923 14.576 21.844 1.00 8.24 ? 7 BDA B C16 1 HETATM 143 C C17 . BDA B 2 . ? 13.493 14.595 21.775 1.00 9.04 ? 7 BDA B C17 1 HETATM 144 O O17 . BDA B 2 . ? 12.790 15.751 21.649 1.00 16.01 ? 7 BDA B O17 1 HETATM 145 C C18 . BDA B 2 . ? 12.761 13.380 21.841 1.00 10.93 ? 7 BDA B C18 1 HETATM 146 C C19 . BDA B 2 . ? 11.330 13.451 21.775 1.00 13.27 ? 7 BDA B C19 1 HETATM 147 O O19 . BDA B 2 . ? 10.698 14.500 21.656 1.00 15.89 ? 7 BDA B O19 1 HETATM 148 C C20 . BDA B 2 . ? 10.616 12.219 21.855 1.00 13.16 ? 7 BDA B C20 1 HETATM 149 C C21 . BDA B 2 . ? 10.553 7.328 22.297 1.00 28.12 ? 7 BDA B C21 1 HETATM 150 C "C1'" . BDA B 2 . ? 18.221 11.527 20.697 1.00 12.83 ? 7 BDA B "C1'" 1 HETATM 151 C "C2'" . BDA B 2 . ? 18.171 10.814 19.336 1.00 15.30 ? 7 BDA B "C2'" 1 HETATM 152 C "C3'" . BDA B 2 . ? 18.841 11.642 18.227 1.00 17.84 ? 7 BDA B "C3'" 1 HETATM 153 N "N3'" . BDA B 2 . ? 18.712 10.792 17.045 1.00 22.41 ? 7 BDA B "N3'" 1 HETATM 154 C "C4'" . BDA B 2 . ? 20.310 11.990 18.625 1.00 17.28 ? 7 BDA B "C4'" 1 HETATM 155 O "O4'" . BDA B 2 . ? 21.234 10.857 18.658 1.00 18.11 ? 7 BDA B "O4'" 1 HETATM 156 C "C5'" . BDA B 2 . ? 20.261 12.666 20.012 1.00 15.91 ? 7 BDA B "C5'" 1 HETATM 157 O "O5'" . BDA B 2 . ? 19.577 11.871 21.032 1.00 13.96 ? 7 BDA B "O5'" 1 HETATM 158 C "C6'" . BDA B 2 . ? 21.686 12.949 20.463 1.00 16.41 ? 7 BDA B "C6'" 1 HETATM 159 C "C7'" . BDA B 2 . ? 19.189 11.464 15.851 1.00 30.90 ? 7 BDA B "C7'" 1 HETATM 160 C "C8'" . BDA B 2 . ? 18.607 10.812 14.608 1.00 37.32 ? 7 BDA B "C8'" 1 HETATM 161 C C9A . BDA B 2 . ? 17.430 11.390 13.997 0.50 38.09 ? 7 BDA B C9A 1 HETATM 162 C C9B . BDA B 2 . ? 19.194 9.620 14.003 0.50 43.55 ? 7 BDA B C9B 1
spin
Assembly
Assembly ID: 1agl_1
Assembly defined by
: Author
PDB ID
:
1agl
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.2 Å
UniProt ID
: N/A
PubMed ID
:
9166763
Ligand 1
:
BDA
Ligand 2
:
BDA
Ligand 3
:
DNA
Download
mmCIF Format
PDB Format
Ligand ID
NUC pairing detail
Ligand Name
Synonyms
Formula
2D structure
BDA
N/A
4-methylbenzyl-n-bis[daunomycin]
1: Wp631;
"C62 H66 N2 O20"
BDA
N/A
4-methylbenzyl-n-bis[daunomycin]
1: Wp631;
"C62 H66 N2 O20"
DNA
A2:DNA A1:DNA
Deoxyribonucleic acid
N/A
"C11 H8 O4"
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)
