Q-BioLiP BL3153147

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data_1aga_1
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1   C C1 . AAL A 1 . ? 3.219  -0.637 19.462 1.00 0.00 ? 1 AAL A C1 1
HETATM 2   C C2 . AAL A 1 . ? 4.519  0.024  18.980 1.00 0.00 ? 1 AAL A C2 1
HETATM 3   C C3 . AAL A 1 . ? 4.163  1.425  18.481 1.00 0.00 ? 1 AAL A C3 1
HETATM 4   C C4 . AAL A 1 . ? 3.190  1.341  17.330 1.00 0.00 ? 1 AAL A C4 1
HETATM 5   C C5 . AAL A 1 . ? 1.962  0.991  18.165 1.00 0.00 ? 1 AAL A C5 1
HETATM 6   C C6 . AAL A 1 . ? 2.093  1.952  19.331 1.00 0.00 ? 1 AAL A C6 1
HETATM 7   O O2 . AAL A 1 . ? 5.119  -0.701 17.908 1.00 0.00 ? 1 AAL A O2 1
HETATM 8   O O3 . AAL A 1 . ? 3.517  2.147  19.514 1.00 0.00 ? 1 AAL A O3 1
HETATM 9   O O4 . AAL A 1 . ? 2.970  2.609  16.719 1.00 0.00 ? 1 AAL A O4 1
HETATM 10  O O5 . AAL A 1 . ? 2.107  -0.398 18.564 1.00 0.00 ? 1 AAL A O5 1
HETATM 11  C C1 . GAL A 1 . ? 2.847  2.618  15.335 1.00 0.00 ? 2 GAL A C1 1
HETATM 12  C C2 . GAL A 1 . ? 1.457  3.124  14.979 1.00 0.00 ? 2 GAL A C2 1
HETATM 13  C C3 . GAL A 1 . ? 1.316  3.291  13.473 1.00 0.00 ? 2 GAL A C3 1
HETATM 14  C C4 . GAL A 1 . ? 2.447  4.155  12.931 1.00 0.00 ? 2 GAL A C4 1
HETATM 15  C C5 . GAL A 1 . ? 3.795  3.614  13.394 1.00 0.00 ? 2 GAL A C5 1
HETATM 16  C C6 . GAL A 1 . ? 4.956  4.494  12.982 1.00 0.00 ? 2 GAL A C6 1
HETATM 17  O O2 . GAL A 1 . ? 0.483  2.217  15.479 1.00 0.00 ? 2 GAL A O2 1
HETATM 18  O O3 . GAL A 1 . ? 0.021  3.962  13.166 1.00 0.00 ? 2 GAL A O3 1
HETATM 19  O O4 . GAL A 1 . ? 2.311  5.497  13.395 1.00 0.00 ? 2 GAL A O4 1
HETATM 20  O O5 . GAL A 1 . ? 3.830  3.522  14.827 1.00 0.00 ? 2 GAL A O5 1
HETATM 21  O O6 . GAL A 1 . ? 5.150  4.461  11.576 1.00 0.00 ? 2 GAL A O6 1
HETATM 22  C C1 . AAL A 1 . ? -1.057 3.106  13.132 1.00 0.00 ? 3 AAL A C1 1
HETATM 23  C C2 . AAL A 1 . ? -2.280 3.902  12.650 1.00 0.00 ? 3 AAL A C2 1
HETATM 24  C C3 . AAL A 1 . ? -3.316 2.893  12.151 1.00 0.00 ? 3 AAL A C3 1
HETATM 25  C C4 . AAL A 1 . ? -2.756 2.092  11.000 1.00 0.00 ? 3 AAL A C4 1
HETATM 26  C C5 . AAL A 1 . ? -1.839 1.204  11.835 1.00 0.00 ? 3 AAL A C5 1
HETATM 27  C C6 . AAL A 1 . ? -2.737 0.837  13.001 1.00 0.00 ? 3 AAL A C6 1
HETATM 28  O O2 . AAL A 1 . ? -1.952 4.784  11.578 1.00 0.00 ? 3 AAL A O2 1
HETATM 29  O O3 . AAL A 1 . ? -3.617 1.972  13.184 1.00 0.00 ? 3 AAL A O3 1
HETATM 30  O O4 . AAL A 1 . ? -3.744 1.267  10.389 1.00 0.00 ? 3 AAL A O4 1
HETATM 31  O O5 . AAL A 1 . ? -0.709 2.024  12.234 1.00 0.00 ? 3 AAL A O5 1
HETATM 32  C C1 . GAL A 1 . ? -3.690 1.156  9.005  1.00 0.00 ? 4 GAL A C1 1
HETATM 33  C C2 . GAL A 1 . ? -3.434 -0.300 8.649  1.00 0.00 ? 4 GAL A C2 1
HETATM 34  C C3 . GAL A 1 . ? -3.508 -0.506 7.143  1.00 0.00 ? 4 GAL A C3 1
HETATM 35  C C4 . GAL A 1 . ? -4.822 0.042  6.601  1.00 0.00 ? 4 GAL A C4 1
HETATM 36  C C5 . GAL A 1 . ? -5.027 1.480  7.064  1.00 0.00 ? 4 GAL A C5 1
HETATM 37  C C6 . GAL A 1 . ? -6.370 2.045  6.652  1.00 0.00 ? 4 GAL A C6 1
HETATM 38  O O2 . GAL A 1 . ? -2.162 -0.690 9.149  1.00 0.00 ? 4 GAL A O2 1
HETATM 39  O O3 . GAL A 1 . ? -3.442 -1.963 6.836  1.00 0.00 ? 4 GAL A O3 1
HETATM 40  O O4 . GAL A 1 . ? -5.916 -0.747 7.065  1.00 0.00 ? 4 GAL A O4 1
HETATM 41  O O5 . GAL A 1 . ? -4.965 1.556  8.497  1.00 0.00 ? 4 GAL A O5 1
HETATM 42  O O6 . GAL A 1 . ? -6.439 2.230  5.246  1.00 0.00 ? 4 GAL A O6 1
HETATM 43  C C1 . AAL A 1 . ? -2.161 -2.469 6.802  1.00 0.00 ? 5 AAL A C1 1
HETATM 44  C C2 . AAL A 1 . ? -2.239 -3.925 6.320  1.00 0.00 ? 5 AAL A C2 1
HETATM 45  C C3 . AAL A 1 . ? -0.847 -4.318 5.821  1.00 0.00 ? 5 AAL A C3 1
HETATM 46  C C4 . AAL A 1 . ? -0.434 -3.433 4.670  1.00 0.00 ? 5 AAL A C4 1
HETATM 47  C C5 . AAL A 1 . ? -0.123 -2.195 5.505  1.00 0.00 ? 5 AAL A C5 1
HETATM 48  C C6 . AAL A 1 . ? 0.644  -2.789 6.671  1.00 0.00 ? 5 AAL A C6 1
HETATM 49  O O2 . AAL A 1 . ? -3.167 -4.083 5.248  1.00 0.00 ? 5 AAL A O2 1
HETATM 50  O O3 . AAL A 1 . ? 0.101  -4.119 6.854  1.00 0.00 ? 5 AAL A O3 1
HETATM 51  O O4 . AAL A 1 . ? 0.775  -3.876 4.059  1.00 0.00 ? 5 AAL A O4 1
HETATM 52  O O5 . AAL A 1 . ? -1.398 -1.625 5.904  1.00 0.00 ? 5 AAL A O5 1
HETATM 53  C C1 . GAL A 1 . ? 0.844  -3.774 2.675  1.00 0.00 ? 6 GAL A C1 1
HETATM 54  C C2 . GAL A 1 . ? 1.977  -2.824 2.319  1.00 0.00 ? 6 GAL A C2 1
HETATM 55  C C3 . GAL A 1 . ? 2.192  -2.785 0.813  1.00 0.00 ? 6 GAL A C3 1
HETATM 56  C C4 . GAL A 1 . ? 2.375  -4.197 0.271  1.00 0.00 ? 6 GAL A C4 1
HETATM 57  C C5 . GAL A 1 . ? 1.232  -5.093 0.734  1.00 0.00 ? 6 GAL A C5 1
HETATM 58  C C6 . GAL A 1 . ? 1.414  -6.539 0.322  1.00 0.00 ? 6 GAL A C6 1
HETATM 59  O O2 . GAL A 1 . ? 1.678  -1.527 2.819  1.00 0.00 ? 6 GAL A O2 1
HETATM 60  O O3 . GAL A 1 . ? 3.421  -1.999 0.496  1.00 0.00 ? 6 GAL A O3 1
HETATM 61  O O4 . GAL A 1 . ? 3.605  -4.750 0.735  1.00 0.00 ? 6 GAL A O4 1
HETATM 62  O O5 . GAL A 1 . ? 1.135  -5.078 2.167  1.00 0.00 ? 6 GAL A O5 1
HETATM 63  O O6 . GAL A 1 . ? 1.289  -6.691 -1.084 1.00 0.00 ? 6 GAL A O6 1
HETATM 64  C C1 . AAL B 1 . ? -1.057 3.106  22.602 1.00 0.00 ? 1 AAL B C1 1
HETATM 65  C C2 . AAL B 1 . ? -2.280 3.902  22.120 1.00 0.00 ? 1 AAL B C2 1
HETATM 66  C C3 . AAL B 1 . ? -3.316 2.893  21.621 1.00 0.00 ? 1 AAL B C3 1
HETATM 67  C C4 . AAL B 1 . ? -2.756 2.092  20.470 1.00 0.00 ? 1 AAL B C4 1
HETATM 68  C C5 . AAL B 1 . ? -1.839 1.204  21.305 1.00 0.00 ? 1 AAL B C5 1
HETATM 69  C C6 . AAL B 1 . ? -2.737 0.837  22.471 1.00 0.00 ? 1 AAL B C6 1
HETATM 70  O O2 . AAL B 1 . ? -1.952 4.784  21.048 1.00 0.00 ? 1 AAL B O2 1
HETATM 71  O O3 . AAL B 1 . ? -3.617 1.972  22.654 1.00 0.00 ? 1 AAL B O3 1
HETATM 72  O O4 . AAL B 1 . ? -3.744 1.267  19.859 1.00 0.00 ? 1 AAL B O4 1
HETATM 73  O O5 . AAL B 1 . ? -0.709 2.024  21.704 1.00 0.00 ? 1 AAL B O5 1
HETATM 74  C C1 . GAL B 1 . ? -3.690 1.156  18.475 1.00 0.00 ? 2 GAL B C1 1
HETATM 75  C C2 . GAL B 1 . ? -3.434 -0.300 18.119 1.00 0.00 ? 2 GAL B C2 1
HETATM 76  C C3 . GAL B 1 . ? -3.508 -0.506 16.613 1.00 0.00 ? 2 GAL B C3 1
HETATM 77  C C4 . GAL B 1 . ? -4.822 0.042  16.071 1.00 0.00 ? 2 GAL B C4 1
HETATM 78  C C5 . GAL B 1 . ? -5.027 1.480  16.534 1.00 0.00 ? 2 GAL B C5 1
HETATM 79  C C6 . GAL B 1 . ? -6.370 2.045  16.122 1.00 0.00 ? 2 GAL B C6 1
HETATM 80  O O2 . GAL B 1 . ? -2.162 -0.690 18.619 1.00 0.00 ? 2 GAL B O2 1
HETATM 81  O O3 . GAL B 1 . ? -3.442 -1.963 16.336 1.00 0.00 ? 2 GAL B O3 1
HETATM 82  O O4 . GAL B 1 . ? -5.916 -0.747 16.535 1.00 0.00 ? 2 GAL B O4 1
HETATM 83  O O5 . GAL B 1 . ? -4.965 1.556  17.967 1.00 0.00 ? 2 GAL B O5 1
HETATM 84  O O6 . GAL B 1 . ? -6.439 2.230  14.716 1.00 0.00 ? 2 GAL B O6 1
HETATM 85  C C1 . AAL B 1 . ? -2.161 -2.469 16.302 1.00 0.00 ? 3 AAL B C1 1
HETATM 86  C C2 . AAL B 1 . ? -2.239 -3.925 15.820 1.00 0.00 ? 3 AAL B C2 1
HETATM 87  C C3 . AAL B 1 . ? -0.847 -4.318 15.321 1.00 0.00 ? 3 AAL B C3 1
HETATM 88  C C4 . AAL B 1 . ? -0.434 -3.433 14.170 1.00 0.00 ? 3 AAL B C4 1
HETATM 89  C C5 . AAL B 1 . ? -0.123 -2.195 15.005 1.00 0.00 ? 3 AAL B C5 1
HETATM 90  C C6 . AAL B 1 . ? 0.644  -2.789 16.171 1.00 0.00 ? 3 AAL B C6 1
HETATM 91  O O2 . AAL B 1 . ? -3.167 -4.083 14.748 1.00 0.00 ? 3 AAL B O2 1
HETATM 92  O O3 . AAL B 1 . ? 0.101  -4.119 16.354 1.00 0.00 ? 3 AAL B O3 1
HETATM 93  O O4 . AAL B 1 . ? 0.775  -3.876 13.559 1.00 0.00 ? 3 AAL B O4 1
HETATM 94  O O5 . AAL B 1 . ? -1.398 -1.625 15.404 1.00 0.00 ? 3 AAL B O5 1
HETATM 95  C C1 . GAL B 1 . ? 0.844  -3.774 12.175 1.00 0.00 ? 4 GAL B C1 1
HETATM 96  C C2 . GAL B 1 . ? 1.977  -2.824 11.819 1.00 0.00 ? 4 GAL B C2 1
HETATM 97  C C3 . GAL B 1 . ? 2.192  -2.785 10.313 1.00 0.00 ? 4 GAL B C3 1
HETATM 98  C C4 . GAL B 1 . ? 2.375  -4.197 9.771  1.00 0.00 ? 4 GAL B C4 1
HETATM 99  C C5 . GAL B 1 . ? 1.232  -5.093 10.234 1.00 0.00 ? 4 GAL B C5 1
HETATM 100 C C6 . GAL B 1 . ? 1.414  -6.539 9.822  1.00 0.00 ? 4 GAL B C6 1
HETATM 101 O O2 . GAL B 1 . ? 1.678  -1.527 12.319 1.00 0.00 ? 4 GAL B O2 1
HETATM 102 O O3 . GAL B 1 . ? 3.421  -1.999 10.036 1.00 0.00 ? 4 GAL B O3 1
HETATM 103 O O4 . GAL B 1 . ? 3.605  -4.750 10.235 1.00 0.00 ? 4 GAL B O4 1
HETATM 104 O O5 . GAL B 1 . ? 1.135  -5.078 11.667 1.00 0.00 ? 4 GAL B O5 1
HETATM 105 O O6 . GAL B 1 . ? 1.289  -6.691 8.416  1.00 0.00 ? 4 GAL B O6 1
HETATM 106 C C1 . AAL B 1 . ? 3.219  -0.637 10.002 1.00 0.00 ? 5 AAL B C1 1
HETATM 107 C C2 . AAL B 1 . ? 4.519  0.024  9.520  1.00 0.00 ? 5 AAL B C2 1
HETATM 108 C C3 . AAL B 1 . ? 4.163  1.425  9.021  1.00 0.00 ? 5 AAL B C3 1
HETATM 109 C C4 . AAL B 1 . ? 3.190  1.341  7.870  1.00 0.00 ? 5 AAL B C4 1
HETATM 110 C C5 . AAL B 1 . ? 1.962  0.991  8.705  1.00 0.00 ? 5 AAL B C5 1
HETATM 111 C C6 . AAL B 1 . ? 2.093  1.952  9.871  1.00 0.00 ? 5 AAL B C6 1
HETATM 112 O O2 . AAL B 1 . ? 5.119  -0.701 8.448  1.00 0.00 ? 5 AAL B O2 1
HETATM 113 O O3 . AAL B 1 . ? 3.517  2.147  10.054 1.00 0.00 ? 5 AAL B O3 1
HETATM 114 O O4 . AAL B 1 . ? 2.970  2.609  7.259  1.00 0.00 ? 5 AAL B O4 1
HETATM 115 O O5 . AAL B 1 . ? 2.107  -0.398 9.104  1.00 0.00 ? 5 AAL B O5 1
HETATM 116 C C1 . GAL B 1 . ? 2.847  2.618  5.875  1.00 0.00 ? 6 GAL B C1 1
HETATM 117 C C2 . GAL B 1 . ? 1.457  3.124  5.519  1.00 0.00 ? 6 GAL B C2 1
HETATM 118 C C3 . GAL B 1 . ? 1.316  3.291  4.013  1.00 0.00 ? 6 GAL B C3 1
HETATM 119 C C4 . GAL B 1 . ? 2.447  4.155  3.471  1.00 0.00 ? 6 GAL B C4 1
HETATM 120 C C5 . GAL B 1 . ? 3.795  3.614  3.934  1.00 0.00 ? 6 GAL B C5 1
HETATM 121 C C6 . GAL B 1 . ? 4.956  4.494  3.522  1.00 0.00 ? 6 GAL B C6 1
HETATM 122 O O2 . GAL B 1 . ? 0.483  2.217  6.019  1.00 0.00 ? 6 GAL B O2 1
HETATM 123 O O3 . GAL B 1 . ? 0.021  3.962  3.636  1.00 0.00 ? 6 GAL B O3 1
HETATM 124 O O4 . GAL B 1 . ? 2.311  5.497  3.935  1.00 0.00 ? 6 GAL B O4 1
HETATM 125 O O5 . GAL B 1 . ? 3.830  3.522  5.367  1.00 0.00 ? 6 GAL B O5 1
HETATM 126 O O6 . GAL B 1 . ? 5.150  4.461  2.116  1.00 0.00 ? 6 GAL B O6 1

spin

Assembly

Assembly ID: 1aga_1

Assembly defined by: Author

PDB ID: 1aga

Experimental method: FIBER DIFFRACTION

Resolution: 3.0 Å

UniProt ID: N/A

PubMed ID: 4453017

Ligand 1 : AAL

Ligand 2 : GAL

Ligand 3 : AAL

Ligand 4 : GAL

Ligand 5 : AAL

Ligand 6 : GAL

Ligand 7 : AAL

Ligand 8 : GAL

Ligand 9 : AAL

Ligand 10 : GAL

Ligand 11 : AAL

Ligand 12 : GAL

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mmCIF Format

PDB Format

Ligand ID	NUC pairing detail	Ligand Name	Synonyms	Formula
AAL	N/A	3,6-anhydro-l-galactose	1: 3,6-anhydro-alpha-l-galactopyranose; 2: 3,6-anhydro-alpha-l-galactose; 3: (1s,3r,4s,5r,8r)-2,6-dioxabicyclo[3.2.1]octane-3,4,8-triol;	"C6 H10 O5"
GAL	N/A	Beta-d-galactose	1: Gal-beta; 2: Beta-d-galactopyranose; 3: Galactose; 4: Beta-d-gal; 5: Wurcs=2.0/1,1,0/[a2112h-1b_1-5]/1/;	"C6 H12 O6"
AAL	N/A	3,6-anhydro-l-galactose	1: 3,6-anhydro-alpha-l-galactopyranose; 2: 3,6-anhydro-alpha-l-galactose; 3: (1s,3r,4s,5r,8r)-2,6-dioxabicyclo[3.2.1]octane-3,4,8-triol;	"C6 H10 O5"
GAL	N/A	Beta-d-galactose	1: Gal-beta; 2: Beta-d-galactopyranose; 3: Galactose; 4: Beta-d-gal; 5: Wurcs=2.0/1,1,0/[a2112h-1b_1-5]/1/;	"C6 H12 O6"
AAL	N/A	3,6-anhydro-l-galactose	1: 3,6-anhydro-alpha-l-galactopyranose; 2: 3,6-anhydro-alpha-l-galactose; 3: (1s,3r,4s,5r,8r)-2,6-dioxabicyclo[3.2.1]octane-3,4,8-triol;	"C6 H10 O5"
GAL	N/A	Beta-d-galactose	1: Gal-beta; 2: Beta-d-galactopyranose; 3: Galactose; 4: Beta-d-gal; 5: Wurcs=2.0/1,1,0/[a2112h-1b_1-5]/1/;	"C6 H12 O6"
AAL	N/A	3,6-anhydro-l-galactose	1: 3,6-anhydro-alpha-l-galactopyranose; 2: 3,6-anhydro-alpha-l-galactose; 3: (1s,3r,4s,5r,8r)-2,6-dioxabicyclo[3.2.1]octane-3,4,8-triol;	"C6 H10 O5"
GAL	N/A	Beta-d-galactose	1: Gal-beta; 2: Beta-d-galactopyranose; 3: Galactose; 4: Beta-d-gal; 5: Wurcs=2.0/1,1,0/[a2112h-1b_1-5]/1/;	"C6 H12 O6"
AAL	N/A	3,6-anhydro-l-galactose	1: 3,6-anhydro-alpha-l-galactopyranose; 2: 3,6-anhydro-alpha-l-galactose; 3: (1s,3r,4s,5r,8r)-2,6-dioxabicyclo[3.2.1]octane-3,4,8-triol;	"C6 H10 O5"
GAL	N/A	Beta-d-galactose	1: Gal-beta; 2: Beta-d-galactopyranose; 3: Galactose; 4: Beta-d-gal; 5: Wurcs=2.0/1,1,0/[a2112h-1b_1-5]/1/;	"C6 H12 O6"
AAL	N/A	3,6-anhydro-l-galactose	1: 3,6-anhydro-alpha-l-galactopyranose; 2: 3,6-anhydro-alpha-l-galactose; 3: (1s,3r,4s,5r,8r)-2,6-dioxabicyclo[3.2.1]octane-3,4,8-triol;	"C6 H10 O5"
GAL	N/A	Beta-d-galactose	1: Gal-beta; 2: Beta-d-galactopyranose; 3: Galactose; 4: Beta-d-gal; 5: Wurcs=2.0/1,1,0/[a2112h-1b_1-5]/1/;	"C6 H12 O6"

Reference

Wei et al, Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions, Genomics, Proteomics & Bioinformatics, 22(1), qzae001, 2024. (PDF)

Function Annotation for BL3153147

Assembly

Assembly ID: 1aga_1

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