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Yang Lab
Function Annotation for BL9916
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
B15:
R2 R3 N4 K5 R7 R31 K32
B29:
R2 R3 N4 K5 R7 R31 K32
F15:
D48 L51 K55
F29:
D48 L51 K55
Residue number in PDB file:
A15:
R8 R9 N10 K11 R13 R37 K38
A29:
R8 R9 N10 K11 R13 R37 K38
C15:
D54 L57 K61
C29:
D54 L57 K61
Receptor
Assembly ID: 1f8v_1
Stoichiometry type
: Homo 180-mer -A180
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1f8v
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.0 Å
Other biological units from the same PDB ID
: 1f8v_2,1f8v_3,1f8v_4,1f8v_5,1f8v_6
UniProt ID
:
Q9J7Z0
PubMed ID
:
11135676
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
A15:RNA A29:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)