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Yang Lab
Function Annotation for BL9894
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
B33:
L40 V41 R42 N43
F33:
L51 L54 K55 F58 A59 D62 Y234 F236 L334 E337 C338 N341 L342 R345 F346 E354 N355
Residue number in PDB file:
A33:
L46 V47 R48 N49
C33:
L57 L60 K61 F64 A65 D68 Y240 F242 L340 E343 C344 N347 L348 R351 F352 E360 N361
Receptor
Assembly ID: 1f8v_1
Stoichiometry type
: Homo 180-mer -A180
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1f8v
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.0 Å
Other biological units from the same PDB ID
: 1f8v_2,1f8v_3,1f8v_4,1f8v_5,1f8v_6
UniProt ID
:
Q9J7Z0
PubMed ID
:
11135676
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)