Function Annotation for BL9863



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Receptor

Assembly ID: 1bdt_1

Stoichiometry type: Homo 4-mer -A4
Assembly defined by: Author
PDB ID: 1bdt
Experimental method: X-RAY DIFFRACTION
Resolution: N/A
UniProt ID: P03050
PubMed ID: 9927650

Ligand

Ligand ID: DNA
Ligand name: Deoxyribonucleic acid
Biological relevance: Relevant

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Ligand ID NUC pairing details Name
DNA A:DNA B:DNA Deoxyribonucleic acid


Binding affinity

Experimental affinity Kd=12pM, from PDBbind-CN

Surface area (A2)

Surface area of receptor 11964.85
Surface area of ligand 8345.09
Surface area of complex 16201.02
Interface area 2054.46

Reference

  • Wei et al, Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand InteractionsGenomics, Proteomics & Bioinformatics, 22(1), qzae001, 2024. (PDF)