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Yang Lab
Function Annotation for BL88307
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A13:
D55 N63 T64 V65 T66 S72 S73
C12:
Y95 F96 L99 D100 G103 A104 E106 S107 R109 L558 L562 T573 D574 N575
E12:
D47 F49 T50 A52 A53 L56 A57 E76 W80 K82 G83
Residue number in PDB file:
A13:
D55 N63 T64 V65 T66 S72 S73
B12:
Y95 F96 L99 D100 G103 A104 E106 S107 R109 L558 L562 T573 D574 N575
C12:
D47 F49 T50 A52 A53 L56 A57 E76 W80 K82 G83
Receptor
Assembly ID: 3s6p_1
Stoichiometry type
: Hetero 420-mer -A240B179C1
Assembly defined by
: complete icosahedral assembly
PDB ID
:
3s6p
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.5 Å
Other biological units from the same PDB ID
: 3s6p_2,3s6p_3,3s6p_4,3s6p_5,3s6p_6
UniProt ID
:
Q82462
PubMed ID
: N/A
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)