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Yang Lab
Function Annotation for BL8222
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
C10:
V24 G25 N26
C9:
Q3 D4 K5
D10:
L7 A8 H9 Q10 A11 S12 L13 N14 K16
D55:
M1
D9:
Q36 I37 K72 H73 K75 T77 H79 P127 I128 D129 E131 T172 I173 Q174 Q176
E10:
G112 G113 L114 H115 N133 T135 N136
Residue number in PDB file:
A10:
V24 G25 N26
A9:
Q3 D4 K5
B10:
L7 A8 H9 Q10 A11 S12 L13 N14 K16
B55:
M1
B9:
Q36 I37 K72 H73 K75 T77 H79 P127 I128 D129 E131 T172 I173 Q174 Q176
C10:
G112 G113 L114 H115 N133 T135 N136
Receptor
Assembly ID: 1ddl_1
Stoichiometry type
: Homo 180-mer -A180
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1ddl
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.7 Å
Other biological units from the same PDB ID
: 1ddl_2,1ddl_3,1ddl_4,1ddl_5,1ddl_6
UniProt ID
:
O89511
PubMed ID
:
10966774
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
A10:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)