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Yang Lab
Function Annotation for BL67613
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A16:
D63 S66 E68 P183 K240 H241
A31:
R62 M65 L67 F70 L71 R73 Q106 K110 F111 E112 L113 F114 W245 C246 P247 R248 P249 P250
A51:
D63 S66 E68 P183 K240 H241
A56:
C76 H78 E79 S80 K81 T124 L125 V126 C128 A176 Y177 P178 R179 M232 T233 R234 I235 Y236
B31:
Y35 I186
C16:
D18 Q20 S21 P22 C23 P26 W27
C19:
G1 L2 P3
C31:
V40 K41 N42 L43 V44 E45 I46 C47 V49 V89 A90 I99 E101 I102 S103 S104 Y105 F106 T107 H108 W109 T110 W169 Y175 R176 N177 T178 S179 F218 C219 L220 R221 M222 R224 D225 T226
C51:
D18 Q20 S21 P22 C23 P26 W27
C54:
G1 L2 P3
C56:
T7 P8 G9 S10 G11 Q12 F13 L14
Residue number in PDB file:
A16:
D63 S66 E68 P183 K240 H241
A31:
R62 M65 L67 F70 L71 R73 Q106 K110 F111 E112 L113 F114 W245 C246 P247 R248 P249 P250
A51:
D63 S66 E68 P183 K240 H241
A56:
C76 H78 E79 S80 K81 T124 L125 V126 C128 A176 Y177 P178 R179 M232 T233 R234 I235 Y236
B31:
Y35 I186
C16:
D18 Q20 S21 P22 C23 P26 W27
C19:
G1 L2 P3
C31:
V40 K41 N42 L43 V44 E45 I46 C47 V49 V89 A90 I99 E101 I102 S103 S104 Y105 F106 T107 H108 W109 T110 W169 Y175 R176 N177 T178 S179 F218 C219 L220 R221 M222 R224 D225 T226
C51:
D18 Q20 S21 P22 C23 P26 W27
C54:
G1 L2 P3
C56:
T7 P8 G9 S10 G11 Q12 F13 L14
Receptor
Assembly ID: 3dpr_6
Stoichiometry type
: Hetero 240-mer -A60B60C60D60
Assembly defined by
: crystal asymmetric unit
PDB ID
:
3dpr
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.5 Å
Other biological units from the same PDB ID
: 3dpr_1,3dpr_2,3dpr_3,3dpr_4,3dpr_5
UniProt ID
:
P04936
P98155
PubMed ID
:
19073182
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)