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Yang Lab
Function Annotation for BL62879
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A25:
D35 D81 R215
C21:
P19
C23:
A1 I3
C24:
P27 K28
C25:
P19 D20 N21 S22 P24 P27 K28 V29 V30 V31 P33 R34
Residue number in PDB file:
125:
D35 D81 R215
321:
P19
323:
A1 I3
324:
P27 K28
325:
P19 D20 N21 S22 P24 P27 K28 V29 V30 V31 P33 R34
Receptor
Assembly ID: 2ws9_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
2ws9
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.0 Å
Other biological units from the same PDB ID
: 2ws9_2,2ws9_3,2ws9_4,2ws9_5
UniProt ID
:
B9VV85
Q91B37
PubMed ID
:
19816570
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
2457.08
Surface area of complex(A
2
)
2457.08
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)