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Yang Lab
Function Annotation for BL5986
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
B38:
D160 D163
C38:
S218 T219 N275
Residue number in PDB file:
B38:
D160 D163
C38:
S218 T219 N275
Receptor
Assembly ID: 1c8n_1
Stoichiometry type
: Hetero 180-mer -A178B2
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1c8n
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.25 Å
Other biological units from the same PDB ID
: 1c8n_2,1c8n_3,1c8n_4,1c8n_5,1c8n_6
UniProt ID
:
Q9IPS9
PubMed ID
:
10864506
Ligand
Ligand ID
:
CA
Ligand name
: Calcium(2+)
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
CA
Calcium(2+)
1. Calcium, doubly charged positive ion; 2. Ca(2+); 3. Calcium ion; 4. Ca2+; 5. Calcium(ii) cation; 6. Calcium(2+) ion; 7. Calcium;
Ca
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
Xscore
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)