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Yang Lab
Function Annotation for BL5607
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A48:
N1 V3 Y6 E9 L15 D63 S66 E68 S180 P182 K241 H242
A49:
Y6 E9 V10 N12
C46:
G1 L2
C47:
W27
C48:
D18 Q20 S21 P22 C23
C49:
D18
Residue number in PDB file:
148:
N1 V3 Y6 E9 L15 D63 S66 E68 S180 P182 K241 H242
149:
Y6 E9 V10 N12
346:
G1 L2
347:
W27
348:
D18 Q20 S21 P22 C23
349:
D18
Receptor
Assembly ID: 1c8m_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1c8m
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.8 Å
Other biological units from the same PDB ID
: 1c8m_2,1c8m_3,1c8m_4,1c8m_5,1c8m_6
UniProt ID
:
Q82122
PubMed ID
: N/A
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)