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Yang Lab
Function Annotation for BL3735
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A41:
T129 G130 H230
Residue number in PDB file:
141:
T129 G130 H230
Receptor
Assembly ID: 1bev_1
Stoichiometry type
: Hetero 240-mer -A60B60C60D60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1bev
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.0 Å
Other biological units from the same PDB ID
: 1bev_2,1bev_3,1bev_4,1bev_5,1bev_6
UniProt ID
:
P12915
PubMed ID
:
7773791
Ligand
Ligand ID
:
SO4
Ligand name
: Sulfate
Biological relevance
: Irrelevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
SO4
Sulfate
1. [so4](2-); 2. Tetraoxidosulfate(2-); 3. So4(2-); 4. Sulphate; 5. Tetraoxosulfate(vi); 6. Sulphate ion; 7. Tetraoxosulfate(2-); 8. Sulfate ion; 9. Sulfuric acid ion(2-); 10. Sulfate anion(2-); 11. Sulfate dianion; 12. Sulfate(2-);
"O4 S"
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
Xscore
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)