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Yang Lab
Function Annotation for BL34379
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A2:
F35 D38 D126 R237 K239 K240
A3:
L26 P27
B2:
A46
C1:
K28
C2:
T17 P19 D20 T21 T22 V23 P24 G27 K28 T29 I30 S31 P33 D35
C3:
P19 H170
C5:
S1 P2 A4
Residue number in PDB file:
12:
F35 D38 D126 R237 K239 K240
13:
L26 P27
22:
A46
31:
K28
32:
T17 P19 D20 T21 T22 V23 P24 G27 K28 T29 I30 S31 P33 D35
33:
P19 H170
35:
S1 P2 A4
Receptor
Assembly ID: 1tme_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1tme
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.8 Å
Other biological units from the same PDB ID
: 1tme_2,1tme_3,1tme_4,1tme_5,1tme_6
UniProt ID
:
P13899
PubMed ID
:
1549565
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)