Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
News
Yang Lab
Function Annotation for BL34354
3D View
Ligand Information
Binding Information
The structure is too big. Click
here
to show 3D view, it may take a long time or fail, depending on the status of the server.
Binding residues
Residue number in mmCIF file:
A33:
F35 D38 D126 R237 K239 K240
A34:
L26 P27
B33:
A46
C31:
S1 P2 A4
C32:
K28
C33:
T17 P19 D20 T21 T22 V23 P24 G27 K28 T29 I30 S31 P33 D35
C34:
P19 H170
Residue number in PDB file:
133:
F35 D38 D126 R237 K239 K240
134:
L26 P27
233:
A46
331:
S1 P2 A4
332:
K28
333:
T17 P19 D20 T21 T22 V23 P24 G27 K28 T29 I30 S31 P33 D35
334:
P19 H170
Receptor
Assembly ID: 1tme_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1tme
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.8 Å
Other biological units from the same PDB ID
: 1tme_2,1tme_3,1tme_4,1tme_5,1tme_6
UniProt ID
:
P13899
PubMed ID
:
1549565
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)