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Yang Lab
Function Annotation for BL29962
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A28:
I61 D62 F68 Y135 A138 P139 W140 C164 K167 N168 I169 A172 P173 L174 T210 Y211 F212 M213 Q214 R215 R217 H240 W244 S246 R291 I350 R353 D357
A29:
D14 L18 F243 Q266 T268 Q410 A411 R412 V424 R425 I428
Residue number in PDB file:
F28:
I61 D62 F68 Y135 A138 P139 W140 C164 K167 N168 I169 A172 P173 L174 T210 Y211 F212 M213 Q214 R215 R217 H240 W244 S246 R291 I350 R353 D357
F29:
D14 L18 F243 Q266 T268 Q410 A411 R412 V424 R425 I428
Receptor
Assembly ID: 1rb8_1
Stoichiometry type
: Hetero 120-mer -A60B60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1rb8
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.5 Å
Other biological units from the same PDB ID
: 1rb8_2,1rb8_3,1rb8_4,1rb8_5,1rb8_6
UniProt ID
:
P08767
P69592
P31281
PubMed ID
:
15046981
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)