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Yang Lab
Function Annotation for BL2928
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A36:
P2 V3 Y6 E9 S66 E68 D119 S180 P182 K241 H242
A37:
Y6 E9 V10 N12
C36:
D18 Q20 S21 P22 C23 P26 W27
C38:
L2
C39:
G1 L2
Residue number in PDB file:
136:
P2 V3 Y6 E9 S66 E68 D119 S180 P182 K241 H242
137:
Y6 E9 V10 N12
336:
D18 Q20 S21 P22 C23 P26 W27
338:
L2
339:
G1 L2
Receptor
Assembly ID: 1aym_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1aym
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.15 Å
Other biological units from the same PDB ID
: 1aym_2,1aym_3,1aym_4,1aym_5,1aym_6
UniProt ID
:
P23008
Q82122
PubMed ID
:
9083115
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)