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Yang Lab
Function Annotation for BL2874
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A16:
H134
A17:
H134
A18:
H134
A19:
H134
A20:
H134
Residue number in PDB file:
116:
H134
117:
H134
118:
H134
119:
H134
120:
H134
Receptor
Assembly ID: 1aym_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1aym
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.15 Å
Other biological units from the same PDB ID
: 1aym_2,1aym_3,1aym_4,1aym_5,1aym_6
UniProt ID
:
P23008
Q82122
PubMed ID
:
9083115
Ligand
Ligand ID
:
ZN
Ligand name
: Zinc(2+)
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
ZN
Zinc(2+)
1. Zn(2+); 2. Zinc(ii) cation; 3. Zinc, ion (zn2+); 4. Zinc ion; 5. Zinc(2+) ion; 6. Zn2+; 7. Zinc cation; 8. Zn(ii);
Zn
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
Xscore
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)