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Yang Lab
Function Annotation for BL250253
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A31:
L20
A40:
I1 E2 S3 I4 I5 K6 T31 A33 T34 S55 L58 E60 N61 S64 D116 T183 P185 K244 H245 P251
B36:
D18
B37:
Y5
B38:
G1 V2
B39:
C27
B40:
D18 H19 S20 S21 A22 P23 L25 P26 C27 G38 Q39 V40 R41 N42 E45 Q48 V49
C40:
N30 Y31 C33 Y35
Residue number in PDB file:
A31:
L20
A40:
I1 E2 S3 I4 I5 K6 T31 A33 T34 S55 L58 E60 N61 S64 D116 T183 P185 K244 H245 P251
B36:
D18
B37:
Y5
B38:
G1 V2
B39:
C27
B40:
D18 H19 S20 S21 A22 P23 L25 P26 C27 G38 Q39 V40 R41 N42 E45 Q48 V49
C40:
N30 Y31 C33 Y35
Receptor
Assembly ID: 6cv1_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
6cv1
Experimental method
: ELECTRON MICROSCOPY
Resolution
: 2.76 Å
Other biological units from the same PDB ID
: 6cv1_2,6cv1_3,6cv1_4,6cv1_5
UniProt ID
:
A0A0X7Z9B1
A0A0P0DH17
E9RIT6
PubMed ID
:
31320648
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
3544.35
Surface area of complex(A
2
)
3544.35
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)