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Yang Lab
Function Annotation for BL249486
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A47:
G14 Q15 D16 P45 V47 P49 D52 V53 D642 Y643 R673 N770
B47:
M879
C47:
Q27 F28 R30 A31 T32 E33 N39 N40
N47:
Q47 Q48
Residue number in PDB file:
A47:
G17 Q18 D19 P48 V50 P52 D55 V56 D645 Y646 R676 N773
B47:
M882
C47:
Q30 F31 R33 A34 T35 E36 N42 N43
M47:
Q47 Q48
Receptor
Assembly ID: 6cgv_1
Stoichiometry type
: Hetero 1200-mer -A720B239C120D60E60F1
Assembly defined by
: complete icosahedral assembly
PDB ID
:
6cgv
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.8 Å
Other biological units from the same PDB ID
: 6cgv_2,6cgv_3,6cgv_4,6cgv_5,6cgv_6
UniProt ID
:
P24936
P03281
P04133
P24937
P12537
P12538
PubMed ID
:
30121295
25071205
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)