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Yang Lab
Function Annotation for BL245021
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
D7:
M882
E7:
G17 Q18 D19 E22 P48 T49 V50 P52 D55 V56 T629 M633 N644 Y646 L647 S648 R676 R872 A884 V922 F923
F7:
A20 S21 Q30 F31 A32 R33 A34 E36 Y38 N42 F45 R46 N47
X7:
P78 P79 V80 E82 E88
Residue number in PDB file:
D7:
M882
E7:
G17 Q18 D19 E22 P48 T49 V50 P52 D55 V56 T629 M633 N644 Y646 L647 S648 R676 R872 A884 V922 F923
F7:
A20 S21 Q30 F31 A32 R33 A34 E36 Y38 N42 F45 R46 N47
X7:
P111 P112 V113 E115 E121
Receptor
Assembly ID: 6b1t_1
Stoichiometry type
: Hetero 1260-mer -A720B240C120D60E60F60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
6b1t
Experimental method
: ELECTRON MICROSCOPY
Resolution
: 3.2 Å
Other biological units from the same PDB ID
: 6b1t_2,6b1t_3,6b1t_4,6b1t_5
UniProt ID
:
P24936
P03281
P68951
P04133
P24937
P12537
P12538
PubMed ID
:
28978703
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
3193.62
Surface area of complex(A
2
)
3193.62
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)