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Yang Lab
Function Annotation for BL22417
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
C37:
L56 L59 K60 F63 A64 D67 F68 Y235 Q237 A338 K341 I342 D345 I346 P347 V350 D354 N355
Residue number in PDB file:
B37:
L64 L67 K68 F71 A72 D75 F76 Y240 Q242 A346 K349 I350 D353 I354 P355 V358 D362 N363
Receptor
Assembly ID: 1nov_1
Stoichiometry type
: Hetero 180-mer -A178B2
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1nov
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.5 Å
Other biological units from the same PDB ID
: 1nov_2,1nov_3,1nov_4,1nov_5,1nov_6
UniProt ID
:
P12871
PubMed ID
:
15299863
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
1882.85
Surface area of complex(A
2
)
1882.85
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)