Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
News
Yang Lab
Function Annotation for BL21619
3D View
Ligand Information
Binding Information
The structure is too big. Click
here
to show 3D view, it may take a long time or fail, depending on the status of the server.
Binding residues
Residue number in mmCIF file:
A7:
N1 V3 Y6 E9 D63 S66 E68 D119 S180 P182 K241 H242
A8:
Y6 E9 V10 N12
C10:
G1 L2
C6:
W27
C7:
D18 Q20 S21 P22 C23
C8:
D18
C9:
L2
Residue number in PDB file:
A7:
N1 V3 Y6 E9 D63 S66 E68 D119 S180 P182 K241 H242
A8:
Y6 E9 V10 N12
C10:
G1 L2
C6:
W27
C7:
D18 Q20 S21 P22 C23
C8:
D18
C9:
L2
Receptor
Assembly ID: 1nd3_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1nd3
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.8 Å
Other biological units from the same PDB ID
: 1nd3_2,1nd3_3,1nd3_4,1nd3_5
UniProt ID
:
Q82122
PubMed ID
:
15452226
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
3213.25
Surface area of complex(A
2
)
3213.25
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)