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Yang Lab
Function Annotation for BL21269
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Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A58:
P2 V3 Y6 D63 S66 E68 D119 S180 P182 K241 H242
A59:
Y6 E9 V10 N12
C56:
G1 L2
C57:
W27
C58:
D18 Q20 S21 P22 C23 W27
C60:
L2
Residue number in PDB file:
A58:
P2 V3 Y6 D63 S66 E68 D119 S180 P182 K241 H242
A59:
Y6 E9 V10 N12
C56:
G1 L2
C57:
W27
C58:
D18 Q20 S21 P22 C23 W27
C60:
L2
Receptor
Assembly ID: 1nd2_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1nd2
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.5 Å
Other biological units from the same PDB ID
: 1nd2_2,1nd2_3,1nd2_4,1nd2_5
UniProt ID
:
Q82122
PubMed ID
:
15452226
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
3207.17
Surface area of complex(A
2
)
3207.17
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)