Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
News
Yang Lab
Function Annotation for BL181051
3D View
Ligand Information
Binding Information
The structure is too big. Click
here
to show 3D view, it may take a long time or fail, depending on the status of the server.
Binding residues
Residue number in mmCIF file:
A28:
R32 S34 F35 D38 D122 P185 R234 K236 K237
A29:
P27 F35
B26:
S1 F3 P4
B27:
S1 F3
B28:
P19 D20 T21 T22 P24 G27 N28 T29 I30 S31 P33 D35
B29:
P19 D20 H170
C28:
A36
Residue number in PDB file:
A28:
R32 S34 F35 D38 D122 P187 R236 K238 K239
A29:
P27 F35
B26:
S1 F3 P4
B27:
S1 F3
B28:
P19 D20 T21 T22 P24 G27 N28 T29 I30 S31 P33 D35
B29:
P19 D20 H170
C28:
A46
Receptor
Assembly ID: 5cfd_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
5cfd
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.5 Å
Other biological units from the same PDB ID
: 5cfd_2,5cfd_3,5cfd_4,5cfd_5
UniProt ID
:
C0MHL9
C3U5A3
PubMed ID
:
27279624
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
2988.16
Surface area of complex(A
2
)
2988.16
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)