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Yang Lab
Function Annotation for BL180998
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A54:
R32 S34 F35 D38 D122 R234 K237
A55:
P27 F35
B52:
S1 F3 P4
B53:
S1
B54:
P19 D20 T21 T22 P24 G27 N28 T29 I30 S31 P33 D35
B55:
P19 D20 H170
C54:
A36
Residue number in PDB file:
A54:
R32 S34 F35 D38 D128 R242 K245
A55:
P27 F35
B52:
S1 F3 P4
B53:
S1
B54:
P19 D20 T21 T22 P24 G27 N28 T29 I30 S31 P33 D35
B55:
P19 D20 H170
C54:
A46
Receptor
Assembly ID: 5cfc_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
5cfc
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.5 Å
Other biological units from the same PDB ID
: 5cfc_2,5cfc_3,5cfc_4,5cfc_5
UniProt ID
:
C0MHL9
E3TMG8
C3U5A3
PubMed ID
:
27279624
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
2949.13
Surface area of complex(A
2
)
2949.13
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)