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Yang Lab
Function Annotation for BL15189
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
C1:
E175
D1:
E175
Residue number in PDB file:
B1:
E175
C1:
E175
Receptor
Assembly ID: 1laj_1
Stoichiometry type
: Homo 180-mer -A180
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1laj
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.4 Å
Other biological units from the same PDB ID
: 1laj_2,1laj_3,1laj_4,1laj_5,1laj_6
UniProt ID
:
P23627
PubMed ID
:
12406691
Ligand
Ligand ID
:
MG
Ligand name
: Magnesium(2+)
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
MG
Magnesium(2+)
1. Magnesium, doubly charged positive ion; 2. Magnesium(ii) cation; 3. Magnesium, ion (mg(2+)); 4. Magnesium(2+) ion; 5. Mg2+; 6. Magnesium cation; 7. Mg(2+); 8. Magnesium ion; 9. Mg;
Mg
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
Xscore
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)