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Yang Lab
Function Annotation for BL11349
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
C32:
E2 T3
C33:
K298 E352 N353
C6:
T124 M125 S126 R180 P190 V192 T349 I350
Residue number in PDB file:
232:
E3002 T3003
233:
K2116 E2170 N2171
26:
P2008 V2010 T2167 I2168 T3124 M3125 S3126 R3180
Receptor
Assembly ID: 1bmv_1
Stoichiometry type
: Hetero 120-mer -A60B60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1bmv
Experimental method
: X-RAY DIFFRACTION
Resolution
: N/A
Other biological units from the same PDB ID
: 1bmv_2,1bmv_3,1bmv_4,1bmv_5,1bmv_6
UniProt ID
:
P23009
PubMed ID
:
2749253
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
A6:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)