RNAthreader results for job RTH000051 (Example)

[Click on RTH000051_results.tar.bz2 to download the tarball file including all results listed on this page]
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  Predicted secondary structure
        

>Example
CCGCCGCGCCAUGCCUGUGGCGG
(((((......(....).)))))



Download the Predicted secondary structure file
Secondary structure visualized by forna



   Templates detected by RNAthreader
Rank
Template
Coverage
Identity
Z-score
Alignment
QueryCCGCCGCGCCAUGCCUGUGGCGG
1 6ZPF_L_K 0.696 0.652 3.926 CCGCC------UGGCUG-GGCGG
2 4CXG_1 1.0 0.826 2.587 CCGCCGCGCCACGGCCCUGGCGG
3 6ZOK_2 0.696 0.609 3.678 CCGCC------C-CCCGUGGCGG
4 364D_B_C_A 0.913 0.696 2.672 CUGCCAGGCAUUGCCU--GGCGG
5 6SZU_V_M 1.0 0.826 2.436 CCGUCUCGCCUUGCCUGUGACGG


  Full-length model by Rosetta

         This model is built using template: 6ZPF_L_K

Query-template alignment by RNAthreader:

>Example
CCGCCGCGCCAUGCCUGUGGCGG
>6ZPF_L_K
CCGCC------UGGCUG-GGCGG



Download model in PDB format
Download the residue level analysis by MolProbity
Structure visualized by 3Dmol
Clashscore = 16.37


Reference

  • Z Du, Z Peng, J Yang, RNA threading with secondary structure and sequence profile, Bioinformatics, 40: btae080 (2024). (PDF)